Rhincodon typus (whale shark): 109927682
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Entry
109927682 CDS
T06055
Symbol
sqstm1
Name
(RefSeq) sequestosome-1 isoform X2
KO
K14381
sequestosome 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04137
Mitophagy - animal
rtp04140
Autophagy - animal
rtp04217
Necroptosis
rtp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109927682 (sqstm1)
04137 Mitophagy - animal
109927682 (sqstm1)
09143 Cell growth and death
04217 Necroptosis
109927682 (sqstm1)
04218 Cellular senescence
109927682 (sqstm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109927682 (sqstm1)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109927682 (sqstm1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109927682 (sqstm1)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Mitophagy
Cargo receptors
109927682 (sqstm1)
Pexophagy
109927682 (sqstm1)
Aggrephagy
109927682 (sqstm1)
Xenophagy
109927682 (sqstm1)
ER-phagy
ER-phagy recepters
109927682 (sqstm1)
Other autophagy associated proteins
Midbophagy
109927682 (sqstm1)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
109927682 (sqstm1)
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109927682 (sqstm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_5
ZZ
PB1
DNA_pol_B_thumb
Motif
Other DBs
NCBI-GeneID:
109927682
NCBI-ProteinID:
XP_020383261
LinkDB
All DBs
Position
12:complement(63189082..63207468)
Genome browser
AA seq
447 aa
AA seq
DB search
MAFNVKAYLLGKDEVNREIRRFAVDHGVSTSFEHLYKKVASVFQSLRSENFQMYYKDEEG
DMIAFSSDDELMMALSFLKEGTFRIYIKDKKECKHGQEKGTGAVHPNIVCDACNGPVVGP
RYKCTVCPDYDLCGGCKGKGFHNEHEMLLLQTPQFFHPFERFPRGMWHHKKRNGGLCHWA
MVQQESFAQSAACSGRQQPAAAKAPPAEQAAGSGSQKPDQNVAYLKNVGRNVAAMLSPLG
IDVDIDVEHRGQRFKATGCPMESQPSSTGDNAHSGASSTDQTKTRTTPSSNQEQSETVVM
DVDQTATNQGSFETFTPNNAPQNKTPSVDSNIDEEWTHLSDKGVDPSTGELQSMEQLHLQ
EHEEGQPLIQQQDSCSYDLGPTGLREAALYPHLPQDAEPRLIEALSQMLSMGFHDEGGWL
TRLLQTKQCDIGAALDAMQPAKGPARQ
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaacgtgaaggcttacctgctggggaaagacgaggtaaaccgggagatccgc
cgcttcgccgtcgaccatggcgtctccaccagcttcgagcatctgtacaagaaggtggcc
agtgtcttccagtctcttcggtccgagaactttcagatgtattacaaagatgaggaaggg
gacatgattgcattctccagtgatgatgagctgatgatggctttgtccttccttaaggaa
gggacctttcgcatctacatcaaagacaagaaggaatgcaaacatggccaggagaaagga
actggggcagttcacccaaacattgtctgtgatgcctgtaatggccctgtggttggtcct
cgctacaagtgcactgtctgccctgactacgacctgtgcggtggctgcaaagggaaagga
ttccacaatgaacatgagatgctgctcctgcagactcctcaattcttccatccatttgag
cggtttccccgagggatgtggcaccacaagaagagaaatggaggtctgtgtcactgggct
atggtgcagcaagaatcctttgctcagtctgcagcttgctctggtagacagcagccagca
gctgcaaaggctcctccagctgagcaagcagcaggttctgggagtcagaaaccagatcag
aatgtggcctatctgaagaatgtgggacgaaatgtggctgcaatgctcagtccattgggt
attgatgttgacattgatgtggagcacaggggccagcgttttaaagctactgggtgcccc
atggaaagtcagcctagctccacaggtgacaatgcacattctggtgcatcatctactgac
cagaccaagaccagaacaactcccagctccaatcaggagcagagtgagactgtggtcatg
gacgtggatcagactgccacaaatcagggttccttcgagactttcaccccaaacaatgca
ccgcaaaacaagactcccagtgttgacagtaatattgatgaggaatggactcatctgtcg
gacaaaggggtcgatccatcaactggtgaactgcagtcaatggagcaacttcatttgcag
gaacatgaggaagggcaacccttaatccagcaacaagattcttgttcctatgacctggga
cccactggattgagagaagcagctctgtaccctcatcttccacaggatgcagagccacgc
ctgatagaagccctatctcaaatgctgtccatgggattccatgatgagggaggttggttg
actcggctcttgcaaaccaagcagtgtgacattggagcagcgcttgatgctatgcaacct
gcaaaggggccagctcgccaataa
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