Rhincodon typus (whale shark): 109928660
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Entry
109928660 CDS
T06055
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109928660 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109928660 (smcr8a)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
109928660 (smcr8a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Cor1
Motif
Other DBs
NCBI-GeneID:
109928660
NCBI-ProteinID:
XP_020384197
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All DBs
Position
21:38078128..38092259
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AA seq
941 aa
AA seq
DB search
MITAPDVVALTHEDEYGQQYNDDSMPPFQFQSENPWSKTATAKFEKDFILISEFSEQVGP
QPLLTIPDNARGNFDLNYFSLRIMSVDYQASFVGHPPGTSYPKLNFVEDSKVVLGDSKEG
AFAYVHHLTLYDLEARGFVRPFCVAYISADENKIMQQFQELSDDFSKASECLKTGNRKAF
AHELEKKLQDLEYTRNVLHNETEIQKRSNDKGYYSSVAIEKANELANVEKCIIEHQDLLM
QIRTYSHKKTQDADYFYYDPEYGIEQSDVGLEQMAKTDEMCEKNSFSDRTSYTPKFTRTK
SAKCFEKKLKTLEELCDSYFFNQTLEQLKQVEKFFRGDVCYLITSQIEKELLKHQQLTSF
LFEDPLLLTDVEQTEKQQRHDKLLPAFNILSPKLLVHPCLSNEATSFESYKSCVESVPIK
LDQQVNAESYHGTAAESIPCKNPPATSDCLELEGKEKGSISSGESIEVLGTEKSCPAPIF
PKSESQTNLQCQHPEIGRRKFVVTKRTNSEDSIEVLGTTEALIPEDFKATYPSAIYEEPA
LDNEEEKQLSTDLVQPDANMNHGNGFSKADFENTVTLPVLSEAVDSTCCIGKESPSFTKS
VPTFVTEEYNDGVVNVPPQRCKTMDQIFHSDLSQQIEGNGLYGADDQVLSNCELQYNDIP
GNGETAQIPADEYLDNMSYMSASLYSDRTPSPALPNCPTKKLSGKRKKQSGKNSLWFIRQ
YSFAQQAIFSLLSGRTLVIVGEQEGKVKKLVNALSTFVPHCGRDSDSIKQWVTFPLQINH
LQTWKLIGLQRTVSPLGSSILHSLNRYSRYISILDCDNKTLRCPQYKGQLITRLADHRTQ
IKRGSTYSMHVHNMLTQLCSQAFLYAFCHHLHLPIDERETEELVTYRRVNFLKHHLGLTN
DDSKIVQYFAELIKMHYLHEPGKGLNPVLQFNYISSSVFKI
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgatcactgctcctgacgtcgtggctctcacccacgaagatgagtacggacagcagtat
aacgatgactcgatgccccctttccaatttcagtctgaaaacccctggtccaagacggcc
acggctaaattcgagaaggatttcattctgatttccgagttttccgagcaggtaggccct
cagcctttgttaaccatcccagacaatgcccgcggtaactttgatctcaactatttctct
ctcaggatcatgtctgtggattatcaagcctcctttgtgggtcacccccctggtactagc
tatcctaaactcaattttgtcgaggactccaaggtggtactgggggactccaaagaaggg
gctttcgcctacgttcatcacttgactctgtacgacttggaggcgagagggtttgtaagg
ccgttctgtgtggcttacatctctgctgatgaaaacaagattatgcagcagttccaggag
ctttcagatgatttttccaaagcctcggagtgtttgaaaactggaaataggaaggcgttt
gcccatgaactggaaaagaaactccaggatttggagtacactcggaatgtgttacataat
gaaacagaaatccagaaaagatctaacgataaaggatactactcgtcggtagcaatagaa
aaagccaatgaattagccaatgtggaaaagtgtataatcgaacatcaagatcttttaatg
cagataagaacttattctcacaaaaaaacacaagatgcagactatttttactatgatcca
gaatatggcatagaacaatctgatgttggtttggaacagatggcaaagactgatgaaatg
tgtgaaaaaaatagcttttctgatagaacatcttacacacccaagttcacaaggactaaa
tcggcaaaatgttttgaaaaaaagttgaaaaccttagaagaactttgtgatagttacttt
tttaatcaaactctggaacagcttaagcaggtagagaaattcttcagaggtgacgtatgc
tatttgattaccagtcagattgaaaaagagctgcttaaacatcagcagctaacctccttt
ctgtttgaagacccactactcctcactgatgtagaacaaactgaaaagcaacagcgccat
gataaactgcttccagcttttaacattctgagtcctaagcttttagtacacccctgctta
tcaaatgaagccacaagctttgaatcatacaagtcttgcgtggagtctgtgcctattaaa
ttggatcagcaagtcaatgcagagagttaccatgggactgctgcagaatctataccatgt
aaaaatcctccagcaacttcagactgtcttgaattggaagggaaagaaaaaggaagtatc
agtagtggtgaaagcattgaagtgctgggtacagaaaaatcctgcccagccccaatattt
cctaagtctgagagccaaacaaacctgcagtgccagcatccagaaattggaaggaggaaa
tttgtagtcaccaagcgtacaaacagtgaggacagcattgaagtcctcggtactactgaa
gctctgatacctgaagactttaaggctacctacccaagtgcaatctatgaagaaccagct
ttagacaatgaagaagaaaagcagctgagcactgatcttgtgcagcctgatgcaaacatg
aaccacggtaatggcttcagcaaggcagattttgaaaataccgtaactttgcctgtttta
tctgaggctgtagactctacttgctgtattggaaaagagagccccagttttactaaatca
gtacctacatttgtaactgaagaatataatgatggagtagtcaatgttccaccacaacgc
tgtaaaaccatggaccaaatattccacagtgatttgtcacagcaaattgagggaaatgga
ttatatggtgctgatgatcaagtattatctaactgtgaactacagtataatgatatacct
ggcaatggagaaacagctcaaattccagctgatgaatatttggacaacatgagttatatg
agtgcatcattatattctgacaggactccatctccagccttgccaaactgtccaacaaag
aagctttctggaaaacgcaagaaacagtctggcaagaattcactgtggttcataagacaa
tactcgtttgcacaacaggcaattttttcattgttgtctggccggacacttgtaatagta
ggtgagcaagaaggaaaagtcaagaagcttgtcaatgctttgtcaacatttgtcccccat
tgtggcagggattcagactctataaagcaatgggtaacgtttcctttgcaaatcaaccat
ttacagacctggaaactcattggacttcagagaacagtttctcctctgggttccagtatt
ttgcactcgctgaatcggtacagtcgctacatcagcatactagactgtgacaacaaaact
ctacgttgcccacaatataaaggacagctaatcaccaggctggcagaccacaggactcag
ataaagaggggcagcacgtactccatgcatgttcacaatatgttgacccaactgtgctcc
caggcctttctgtatgctttctgtcatcatctgcaccttcccattgatgaaagagaaact
gaagaattagtcacatatcgaagggtaaactttttaaagcaccacctgggcttgacgaat
gatgatagcaagattgtacaatactttgcagaactgataaagatgcactacctacatgaa
cctggaaagggcttaaatccagttctacaatttaactacatctccagtagtgtgtttaag
atctag
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