Rhincodon typus (whale shark): 109929373
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Entry
109929373 CDS
T06055
Symbol
polm
Name
(RefSeq) DNA-directed DNA/RNA polymerase mu isoform X1
KO
K00977
DNA nucleotidylexotransferase [EC:
2.7.7.31
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109929373 (polm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109929373 (polm)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.31 DNA nucleotidylexotransferase
109929373 (polm)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
109929373 (polm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
DNA_pol_B_palm
BRCT
HHH_5
NTP_transf_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
109929373
NCBI-ProteinID:
XP_048474564
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All DBs
Position
40:complement(6618173..6843464)
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AA seq
519 aa
AA seq
DB search
MTLGLAGKKASCVAVWLSMALLPRKKKRKDPGLPGASHSRAGDGPLTVAKFSEVGIFLVE
RKMGSSRRSFLTQLARKKGFRVEERMSESVTHVVSENNSGDEVLELLDKQSGICRAALVD
ITWFTESMGAGKPLEVENRHRLQVKTAADGGPIGIPISQYACQRRTTLNNKNSLFTEALK
ILAENAQLCENEGRYLAFTRASSILKSLPYCVTKMDDLQGIPSLGEHCKRVIKDILEGGI
CREVEELIQNERYQTLKRFTSIFGVGVKTADKWYREGLRTLHELRASKILLTKEQEAGLL
YYEDLIVPVTRTEADSITKIVEGAVHRFLPAAVIKLTGGFRRGKEYGHDVDFLITHQEEG
KEQGLLYQVINWMAAQGMILYDDITDNKDQKWKNKEPEIFDSFAKCFLIFKLQKDVVNVL
RPNTAGDDDSLAANKAKEIGRGGHAETCERATCAAVKVKDWKAVRVDLVVAPFSQYAYAL
LGWTGSQLFERDLRRYAKHFKHMSLSSHSLFDNEQVGRN
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttggtttggctggaaaaaaggcttcctgtgttgcagtgtggctcagcatggcc
ttgctgcctcggaagaagaagcggaaagatccaggtcttcctggtgcctctcactctcgg
gccggagatggtcccctcacagtggcaaagttctctgaagttggcatatttttggtggag
aggaaaatgggctcgagcaggagaagctttctcacacagcttgctcggaaaaaggggttt
cgagtggaagagcggatgagtgaatccgtgactcatgttgtgtctgagaataactccggt
gatgaggtgttagaattgctggataaacagagtggaatttgcagagcggctttggtagat
atcacgtggtttactgaaagtatgggagcaggcaaacccttggaagtagaaaatcgtcat
cggcttcaggtgaagacagctgctgatggtggccccattggcattcctatttcacagtac
gcctgtcaaagaaggactacactgaataataaaaatagtttatttacggaagctttgaag
atacttgctgaaaatgcacagttatgtgagaatgaaggacgatacctagcattcacaaga
gcatcttctattctgaagtcattgccctattgtgtaaccaaaatggatgatctccaaggg
attcccagtcttggagaacattgcaaaagagtgattaaggacatccttgaaggtggaatc
tgcagggaagttgaggagttaatccaaaatgaaagatatcaaacattaaagcgatttacc
agtatctttggcgttggtgtgaagacagctgataagtggtacagagagggactgcgaact
ctgcatgaactgagagcatcaaaaatactactcacaaaagaacaagaagcaggcttactt
tattatgaagacctcattgtcccagtaacaaggacagaggcagattcaatcacgaaaatc
gttgaaggagctgtacacagatttctgcctgctgcagttatcaagttaactggtggtttt
cgaagaggaaaggagtatggtcatgatgttgactttctcataactcaccaagaagaaggc
aaggaacagggtcttctttaccaagtgattaactggatggctgcccagggtatgatatta
tacgatgacatcacagacaacaaggaccaaaagtggaagaacaaggagcctgagatattt
gatagttttgccaagtgttttttgatcttcaaactgcagaaggatgtggtaaacgttcta
cgcccgaacacagcaggcgatgatgactctttggctgcgaataaggcaaaggaaattggg
cgtggtggccatgcagaaacatgtgagcgtgcaacttgtgctgcagtgaaggttaaagac
tggaaggctgtcagagtggatctggtggttgcacccttcagccagtatgcctatgcctta
ttaggatggacaggctcacagctgtttgaacgagacctacgaagatatgccaagcacttc
aaacatatgagtttgagcagccattctttatttgataatgaacaggtaggaagaaattga
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