Rhincodon typus (whale shark): 109932240
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Entry
109932240 CDS
T06055
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04115
p53 signaling pathway
rtp04210
Apoptosis
rtp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
109932240 (apaf1)
04115 p53 signaling pathway
109932240 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109932240 (apaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
APAF1_C
NB-ARC
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WDR55
APAF-1-like_WHD
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
CARD
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
RMC1_N
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Ge1_WD40
CARD_2
WD40_like
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_SPT8
AAA_16
AAA_22
ATPase_2
AAA_18
Motif
Other DBs
NCBI-GeneID:
109932240
NCBI-ProteinID:
XP_048466272
LinkDB
All DBs
Position
22:16741148..16913524
Genome browser
AA seq
1202 aa
AA seq
DB search
MDERTRSCLLQNRSALEQDIKTSYIMDHLISEEVLSLEDEQKVRAQVTQKERAALLINLI
LQKGNCAVISFYNALLNEGYKELAALLQDGLPIVSASTNKTSIDGPTAFVQTILCEGGVP
QRPVVFVDRPELVRSIRNVLYKLENEPGWITIYGMAGCGKSVLAAEALRNHTVITTCFPG
GVHWVAVGKQDRAGILVKLQNLCSRLNQESHTYPSPPLNIEEARDRLRFLMARKYPRSLL
VLDDIWDSWVLKCFDVQCRILITSRDKSIADIVTGNNFSVSVQSGLTNDKGLEVLARFVN
LEVSSLPKEAHNIVQECKGSPLVVSLIGALLREFPKRWKYYLSQLQNKQFKRIRKSSSYD
YEALDEAMASSIEVLDDYKEYYKDLSILRKDVKVPTKVLSILWALETEEVEDILQVFVNK
SLLFCDRNGKSFHYYLHDLQLDFLTEQYRNQLPDLHAKMVQQYQKTYKGQFPTPSDEDCM
YWYSFLPTHMAEANMDKELYSLMFSVDWMKAKTELMGPAQLINDFVEYRHILDKENSTVR
ENFQEFLSLKGHLLVQKPFPDIVQLGLCQPDFSEVYRQAKLQAVERAKKGAVYLDWMNKK
ALQNLSRLVVRPHSDAVFHACFSHDGLKIASCGADKTLQVFKSETGEKLLELTGHDDEVL
CCAFSPDDKFVATCSSDTKVKVWNLLTGELYHTYHEHSEQVNYCCFSHSPNKILLATCSN
DTYLKTWDLKGTNCRNTLFGHTDYVNHCRFSPDDQYLASCSNDGTVKLWDTSSANQWKSF
DVREQFQKPDAADGDDDEEEVEVLLKCCTWSSDGTQIMVAAKNVIFVFDVLTGDIVTELM
TSSSCTIQSCDVSLTSPLLAVALSHNSVELWNLDLRKRVADCSGHLSWVHCVQFSLDGST
LLSSSDDQTVRLWNTNKVHSASAVSLVRDMDAVFHEDEVFVLVSDKKKCLQLINGKTGDV
MCQSEVQNSCIRCCCLNHQVNLAAIGCGDGILKGGMKSAKFILQSIGWKSQRFQRSLLVA
VGLENGTLKVLELPSGKIQKTLTGHTACVQHCQFTSDGMMLISSSDDSTIRVWNWRTEEC
KVLAGHAEQVKNFKLLKEPQLLSWSFDGTVKVWDYNSGKLLKDYSCHMGAAVLSCDASPN
GSRIASASADKSAKWWDMNTGESLQTFYTNGTNLKSIHVSSDFKTYVTIDNIGILYILKM
IN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacgaacgcgcagttgtttattacaaaatcgctctgcacttgagcaagatatc
aagacctcatatattatggatcacctcataagtgaagaggttctgagtcttgaggatgaa
cagaaggttagagctcaggttacgcagaaagaacgagctgctttacttataaacctaatc
cttcaaaagggtaattgtgctgtcatatctttctacaatgcgttactgaatgaaggatac
aaagaacttgccgcgcttcttcaagatggccttccaattgtctctgcttctacaaataaa
acatctatagatggtccaactgcttttgttcaaactatactttgtgaaggtggtgtgcca
cagcgccctgttgtgtttgttgatcgtccagaacttgtgcgatctatccgaaacgtactc
tacaagctggaaaacgaacctgggtggattactatatatgggatggcaggttgtggaaag
tcagtattagcagctgaagctctgaggaatcacactgttataaccacgtgtttccctgga
ggagtacactgggtagcagttggaaagcaagaccgtgcaggtatccttgttaaactgcag
aatctctgcagccgacttaaccaggagtcccatacttacccaagtccacctcttaacatt
gaggaagctagggaccgactccggttcttgatggcacgtaaataccccagatcccttttg
gttctggatgacatttgggacagctgggtgctaaagtgttttgatgttcaatgtcgtatt
ctaatcaccagcagagacaagagcattgctgatatagttacaggtaataacttctcagtt
tctgtgcaaagtggtctgaccaatgacaagggactggaagtactagcacgttttgttaac
ttggaggtgtcctctctgccaaaagaagcacacaacatagtacaggaatgcaaaggttct
cctcttgtggtctcccttattggtgcactgttgcgagaatttccaaagcgctggaaatat
tatctcagccagctacaaaataaacagttcaaaagaattcgcaaatcttcctcctatgat
tatgaagcactcgatgaggccatggcaagcagcattgaggtattggatgattacaaagaa
tactacaaagatctctctatactgagaaaagacgtgaaagtcccaactaaggttctgagt
attctttgggcgttagaaacagaagaagtggaagacatcttacaagtatttgtcaacaag
tctttattgttctgtgaccgcaatgggaaatcgtttcattattacctgcatgatttacag
ttggacttcctgactgagcagtatcgcaatcagcttccggacttgcatgcaaaaatggtt
cagcaatatcaaaagacatataaaggacagtttccaacaccttccgatgaggattgtatg
tattggtatagttttctaccaacccatatggctgaagcgaatatggacaaggaactctac
tccctcatgttttcagtggattggatgaaggccaaaactgaactgatgggcccagcccag
ctgataaatgactttgtggaatataggcacatactggataaagagaacagtacagtgcgg
gaaaattttcaagaattcttgtctttgaaaggccatcttcttgtgcagaaaccctttcca
gatattgtgcaattgggcctttgtcagcctgatttctctgaagtgtatcggcaggcaaaa
ctgcaggctgtggaacgagccaaaaaaggggctgtatacctggattggatgaacaagaaa
gccttgcagaacttgtctcgccttgttgttcgacctcacagtgatgctgtttttcacgcc
tgtttttctcatgatgggttgaagatagcttcttgtggagcagataaaactttgcaggtt
tttaaaagtgaaactggcgagaaacttttggaactcacgggacacgatgatgaagttcta
tgttgtgcattttcaccagatgacaagtttgtcgccacatgttcctcagatacaaaagtt
aaggtttggaatttattaactggggagttgtatcatacgtaccatgaacatagtgaacaa
gtcaactattgttgtttttcacattcaccaaataagattctgttggcaacctgctctaat
gatacctatttgaaaacatgggatctgaaaggaacaaactgtaggaacactttgtttggc
cacacagattatgttaaccattgcaggttttcacctgatgaccaatatttggcaagttgc
tccaatgatgggacagtgaagctatgggacacctcctcggctaatcagtggaagagcttt
gacgtacgtgagcaattccagaaaccagatgctgctgatggcgatgatgatgaggaagag
gtggaggtgctgttaaaatgctgcacgtggtcatctgatggcactcaaatcatggtagct
gcaaaaaatgttatctttgttttcgatgtgttgaccggtgacattgtaactgaactaatg
acaagtagctcttgcacaattcagtcttgtgatgtttctcttaccagcccattattggca
gtggccttgtcacacaactctgtcgagctatggaacttggatttgcgcaagagagtagct
gactgcagtggccacttgagctgggttcattgtgttcaattttcattggatggctcaact
ttgctatcatcttcagatgaccaaactgttagactatggaataccaataaagtgcatagt
gcctctgctgtgtccttggttcgagatatggatgcagtcttccatgaggatgaagtcttt
gttttagtttctgataagaaaaagtgtttacagctaataaacgggaaaactggtgatgta
atgtgtcagagtgaggtacagaactcgtgtattcgttgttgctgccttaaccatcaggtt
aatttggctgcaattggatgtggagatggaatcttaaagggaggcatgaagtcggccaag
ttcatcctacagagcattgggtggaagagccagcgcttccagcggagcctgttggtagca
gtagggctagaaaatggcacactgaaggttctggagcttcctagtggcaaaattcaaaag
acattaacaggtcacacggcatgtgtccaacattgtcagtttacgtctgatggtatgatg
ctcatttccagttctgatgactccacaataagggtatggaattggcgcacagaggagtgc
aaagtccttgcagggcacgctgaacaagtaaaaaactttaagctgttgaaagaaccacaa
cttctgtcctggtcttttgatgggactgtgaaggtatgggattacaactctggcaaattg
ttgaaggactatagttgtcatatgggagcagcagttctgtcatgtgatgcatcgcccaat
ggcagtagaattgcttctgcttctgctgataaaagtgcaaagtggtgggatatgaataca
ggagaatctctgcagacgttctatacaaatgggacaaacctgaagtccatacatgtttca
tctgacttcaagacctatgtaacgattgataatattggaatactctatatcttgaaaatg
ataaactga
DBGET
integrated database retrieval system
