Rhizobium tropici: RTCIAT899_CH17535
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Entry
RTCIAT899_CH17535 CDS
T02432
Name
(GenBank) resistance nodulation cell division (RND) drug efflux pump, MFP component
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
rtr
Rhizobium tropici
Pathway
rtr01501
beta-Lactam resistance
rtr01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RTCIAT899_CH17535
01503 Cationic antimicrobial peptide (CAMP) resistance
RTCIAT899_CH17535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtr03036
]
RTCIAT899_CH17535
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtr02000
]
RTCIAT899_CH17535
01504 Antimicrobial resistance genes [BR:
rtr01504
]
RTCIAT899_CH17535
Chromosome and associated proteins [BR:
rtr03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
RTCIAT899_CH17535
Transporters [BR:
rtr02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
RTCIAT899_CH17535
Antimicrobial resistance genes [BR:
rtr01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RTCIAT899_CH17535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND
BSH_RND
HH_MFP_RND
RND-MFP_C
YknX_C
BSH_CzcB
HH_EMRA
BSH_CusB
HH_YBHG
Beta-barrel_RND_2
HH_CzcB
HH_AAEA_pHBA
DUF7959
Plasmid_RAQPRD
MalQ_N
N_NLPC_P60
Motif
Other DBs
NCBI-ProteinID:
AGB72869
LinkDB
All DBs
Position
3546159..3547463
Genome browser
AA seq
434 aa
AA seq
DB search
MRKLAPPTSALVYPPTSNRLSAGRSSLTAAGLIAAMLLAGCNQQNSAQNNAPVVKTEVSA
MSLHPQSVAITAELPGRTSAYLVAEVRPQVGGIIRSRNFKEGSEVKEGDVLYEIDPSSYQ
ASYDSAAAALQKAQGALPSAQSKVDRYKSLTQQDAVSKQNLDDAISTLAQANADVASAKA
ALETARINLDYTKMRAPIGGRVDASTVTVGALVTADQTTALTTIRQLDPINVDVTQSSTN
LLEFRRAVAEGRLKTSGNNVSVHLTLEDGSQYKETGTLQFAESSVAETVGTITVRAVFPN
PDRILLPGMYVRATIQEGIAENSFVVPQRAVTRNTKGEPIAMFVTAEGKVQQRVLKVERS
IGNSWLVNQGVADGDRVIVEGVQRVRDGQEVTVSPVTIDDATGEVKQAAADGKPSAEQAG
LEKTDIKAASGVQK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaaagctcgctcctcccacttctgcactcgtatatccgccgacatccaaccgcctt
tcagccggccgctcgtcgctgaccgccgcaggattgatcgctgcgatgttactggccggc
tgcaaccagcagaattccgcgcagaacaatgcgccggtcgtaaagacagaagtcagcgcg
atgtcgctgcatccgcaatccgtcgccatcaccgccgaactgcctggccgcaccagcgcc
tatcttgtcgccgaagtgcggccgcaggtcggcggcatcatccgcagccgcaatttcaag
gaaggcagcgaagtcaaggaaggcgacgtactttacgagatcgatccgtcctcttaccag
gcatcctatgacagtgccgccgccgccttgcaaaaggcccaaggcgccttgccgagtgcc
cagtcgaaggtcgatcgctacaaaagcctcacccagcaggacgcggtcagcaagcagaac
ctcgacgacgcgatttccacattggcccaggccaatgccgatgtggcatccgcaaaggct
gcactggaaacggcgcgcatcaatctcgactacaccaagatgcgcgcgccgatcggcggc
cgcgtcgatgcctccacggtcacggtgggcgctctcgtcaccgccgatcagacgacggcg
ctgacaacaatccgtcagctcgatccgatcaatgtcgatgtcacgcagtcgagcaccaac
ctgctcgaatttcgccgcgccgtcgcggaaggtcggctgaagaccagcggcaacaatgtt
tcggttcacctgacgctcgaagacggcagccaatacaaggaaaccggcacgctgcagttt
gccgaatcctccgttgcggaaacggtcggcacgatcaccgtgcgcgctgtcttccccaat
ccggatcgcatcctgctgccgggcatgtatgttcgcgccaccattcaggaaggcattgcc
gaaaacagcttcgtggtgccgcagcgcgccgtgacccgcaacacgaagggcgaaccgatc
gccatgttcgtgactgcggagggcaaggtacagcagcgggtattgaaggtggaacgcagc
atcggcaatagctggcttgtcaaccagggcgtcgccgacggcgatcgcgtaatcgtcgaa
ggcgttcagcgcgtccgcgacggtcaggaagtcaccgtgtcgccggtaacgatcgacgat
gcgaccggtgaagtgaagcaggccgccgccgatggcaagccgtctgccgagcaggccggg
ctggaaaagaccgatatcaaagccgcctccggcgtccagaagtga
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