Rickettsia typhi TH1527: RTTH1527_03390
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Entry
RTTH1527_03390 CDS
T01802
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rtt
Rickettsia typhi TH1527
Pathway
rtt03030
DNA replication
rtt03410
Base excision repair
rtt03420
Nucleotide excision repair
rtt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RTTH1527_03390 (ligA)
03410 Base excision repair
RTTH1527_03390 (ligA)
03420 Nucleotide excision repair
RTTH1527_03390 (ligA)
03430 Mismatch repair
RTTH1527_03390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtt03032
]
RTTH1527_03390 (ligA)
03400 DNA repair and recombination proteins [BR:
rtt03400
]
RTTH1527_03390 (ligA)
Enzymes [BR:
rtt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RTTH1527_03390 (ligA)
DNA replication proteins [BR:
rtt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RTTH1527_03390 (ligA)
DNA repair and recombination proteins [BR:
rtt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RTTH1527_03390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RTTH1527_03390 (ligA)
MMR (mismatch excision repair)
DNA ligase
RTTH1527_03390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RTTH1527_03390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
PX
Motif
Other DBs
NCBI-ProteinID:
AFE54543
LinkDB
All DBs
Position
complement(902340..904421)
Genome browser
AA seq
693 aa
AA seq
DB search
MQNIDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHL
VLSNSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPIFC
EPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPHKIDNAPEFLEVRGEI
YIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNL
ASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFA
MQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSR
ATLHNFQDIARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKL
RYVSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKRLISNPLDIF
FLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLA
REFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV
LNIEDYKETREQNILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTDLLIVGV
NGGSKLKKAKELNIKIIDEAEWLAFIKCLEKEV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaaaaagaagctaaaaaattattagaagaactcgct
gataaaatagcgatgtataatcatgcttattatatagaagataatccgttagtctcagat
tcggagtatgatcagctatttaatctcaatcttaaattagagaatacatttcctcattta
gttttaagcaatagtcctagcaagaaaataggggcgaaaatcacaaataaatttgctaaa
gttatacatcaagcacctatgctatctcttagcaatgcttttgatgaagaggatataaga
gattttttagaacgtataaaaaattttttacgcattaatgagtttactcctatattttgt
gaacctaaaatagatggtttgtctttttctgctatttataagcatgggttgtttataact
ggagcaacaagaggtgatggatatgttggtgaagatataacgattaatatcaaaacaata
aaaaatttcccgcataaaatagataatgctcctgagtttttagaagtacgcggtgaaatt
tatattgagaaacaagattttgttaatctcaataaagaacaagaagcgcagaacagaggg
aaatttgctaatcctcgtaatgctgcagcagggtctattcgtcaacttgatgttgctatt
acagctcaaagaccgctaaaatattttatatattcaggtggggtaactgagaagaatctt
gcgtctacacaagagcaattacttgcaaaattgaaggcgttaagttttagcgttaacgaa
atatctaaacttgcaagctctgaagaagaaatttttgctttttatgaatatctcaaaaca
aataggcataatttaccttatgaaattgatggggtagtatataagctcaataattttgca
atgcaaaatagaatgggatttattgcacgatctccacgttttgctattgctcataaattt
cctgctataataggacaaacaaagctgctttccattacggtgcaagttggtagaacaggt
atgttaacgcctgtagcagaacttgaccctctagaaataggtggggtcgttgttagtaga
gcaacactacataactttcaagatattgcacgaaaagatgtgcgtattaaagattatgta
tttttgcaacgtgctggtgatgttattcctcaaatcacaggcgttgatataagcaaacgt
tcgaatgatactgtaaagtttgatactcctgtattttgtccatcatgtaattctaaattg
cgttatgtgtctgaagatattattatacgctgtgataacggtcttaactgtcctgctcag
aattatgagcgtatctgtcattttgtatcaaagaatgccatggatattgcaggacttgga
cgtaagcaagtcgcatttttaatagataagaggttaattagtaatccacttgatattttc
tttttaaaaaagaaaaatgaaacaaacttaattagactagagaatatggatggctggggt
aagaaatcagtagcaaatctttggcaaaatatagaaaaatcacaaaaaattagcttgcaa
cggttcatatatgctctaggtattaggcatatcggtgaacaaaacgcaaaattacttgct
agagaatttgtgagctataataattttatagctcaaatggaattgctgagcaaaaacgat
tctgatgtttatcaaaagctaaatgatttagaagggatcggtgataagatgctagtagat
attattgattttttttacgttaaagaaaatatacaacttatcaaaaaacttggtgcagta
ttaaatatcgaagattataaagagactagagaacaaaatattttaacaggtaagatatta
gtatttactggtagtttaaaaacgatatctagagtcgaagctaaagaaatagctgaaaag
cttggtgctaaagttgcatctagcgtatcatcaaacacggatttattaatagtaggtgtg
aacgggggaagtaagcttaaaaaagctaaggagcttaatattaaaattattgatgaagca
gaatggcttgcattcataaaatgcttagaaaaagaagtttag
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