Rhizobium tumorigenes: PR017_09170
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Entry
PR017_09170 CDS
T08990
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rtu
Rhizobium tumorigenes
Pathway
rtu03030
DNA replication
rtu03410
Base excision repair
rtu03420
Nucleotide excision repair
rtu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PR017_09170 (ligA)
03410 Base excision repair
PR017_09170 (ligA)
03420 Nucleotide excision repair
PR017_09170 (ligA)
03430 Mismatch repair
PR017_09170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtu03032
]
PR017_09170 (ligA)
03400 DNA repair and recombination proteins [BR:
rtu03400
]
PR017_09170 (ligA)
Enzymes [BR:
rtu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PR017_09170 (ligA)
DNA replication proteins [BR:
rtu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PR017_09170 (ligA)
DNA repair and recombination proteins [BR:
rtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PR017_09170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PR017_09170 (ligA)
MMR (mismatch excision repair)
DNA ligase
PR017_09170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PR017_09170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
RNA_ligase
Lar_restr_allev
Bep_C_terminal
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WFR94021
LinkDB
All DBs
Position
complement(1848992..1851142)
Genome browser
AA seq
716 aa
AA seq
DB search
MPSEAISVEDLTEADAAAELERLASEIAHHDALYHGKDAPEISDADYDALKRRNDAIEAR
FPALVRIDSPSRHVGAAPSETFAQITHARPMLSLDNTFSQEDVQDFVAGIYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVSAATRGDGTTGENVTANIRTIKEIPNTLPKDAPDV
VEVRGEVYMAKSDFLALNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAW
GEMSEMPADTQLGMVEAFGRWGFPINPLMKRLESVTDILSHYDDIGLKRADLDYDIDGVV
YKVDDLALQARLGFRSRSPRWATAHKFPAEQAFTRLTAIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIKGIGNGGEALRDGRDIRIGDIVIVQRAGDVIPQIVDVVLEKRDA
AGVAYEFPKVCPVCGSHAVRELNEKTGKLDSVTRCTGGFACQAQAKEHLKHFVSRNAYDI
EGLGAKQIDFFFESDDPALQIRTAPDIFTLEERQKASLTRLENIDGFGKVSVGKLYAAIN
GRREIALQRFIYALGIRHVGETNAKLLARSYGTYEAFGEAMREAAPLTGDAWNDLNAIEG
IGEVVARAIVEFYKEPRNSEVIERLLREVRPQDAEKPKASGSPVAGKTVVFTGTLEKMTR
DEAKATAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgaagctatctccgtcgaggatctgaccgaggccgatgcagccgccgaactg
gagcggctggcgagcgagattgcccaccacgacgcgctctatcacggcaaggatgcgccg
gagatctccgacgccgattacgacgcactgaagcggcgcaacgatgcgatcgaggcgcgc
tttccggcgctggtgcgaatcgatagtccttcgcggcatgtcggcgctgctccgtccgag
acctttgcccagatcacccatgcgcggccgatgctgtcgctcgacaacacgttttcgcaa
gaagacgtgcaggatttcgtcgccggtatctaccgcttcctcggccgcctgccggaccag
tcgattgcctttaccgccgagccgaagatcgacgggctgtcgatgtcgatccgctacgag
aacggccgcctggtaagtgccgcgacgcgtggcgacgggacgacgggcgaaaacgtcact
gccaatatccgaaccatcaaggagatcccgaacacgctgccgaaggatgcgcctgatgtc
gtcgaggtgcgcggcgaggtctacatggccaagagcgacttcctggcgctgaacgcccag
atggcggcggagggcaagcagacctacgtcaacccgcgcaacacggccgccggctcgctg
cgccagctcgacgccaaggtgacggcaagccgcaagctgcggttcttcgcctatgcctgg
ggcgagatgtccgagatgccggcggatacccaactcggcatggtcgaggctttcgggcgt
tggggctttccgatcaatccgctgatgaagcggctggaatcggtaaccgatattctcagc
cactatgacgatattggtttgaagcgcgccgatctcgactacgatatcgatggtgtcgtc
tacaaggtcgacgatctcgcgctgcaggctaggctcggcttccgctcgcgcagcccccgc
tgggcgactgcgcacaagtttccggccgagcaggcgtttacgcggctgacagccatcgat
atccaggtcgggcgaacgggcgcgctgacgccggtggcgcggctggagccgattaccgtc
ggcggtgtcgtcgtgaccaatgcgacgctgcacaacgaggactacatcaagggcatcggc
aatggcggcgaggccttgcgggacgggcgcgacatccgcatcggcgatattgtcatcgtc
cagcgcgccggcgatgtcattccgcagatcgtcgatgtggtgcttgagaagcgcgacgcc
gcaggtgtcgcctacgagtttccaaaggtctgcccggtgtgcggcagtcatgcggttcgg
gagttgaacgagaagaccggcaagctcgattcggtcacccgctgcaccggtggttttgcc
tgccaggcgcaggccaaggagcacctgaagcacttcgtctcgcgcaatgcctacgatatc
gaggggctgggcgccaagcagatcgatttcttcttcgaaagcgacgacccggccctgcag
atccgcaccgcgccggatatcttcacgctggaggagcggcagaaggcgtccttgaccagg
ctcgagaatatcgatggcttcggcaaggtcagcgtcggcaagctctatgccgccatcaac
gggcggcgcgagatcgccttgcagcgtttcatctatgcacttggcatccgccacgtgggc
gagaccaatgccaagctgctggcccgctcctacggcacatatgaggccttcggagaggcg
atgcgcgaggcagcgccgctgacgggagatgcatggaacgacctcaatgccatcgagggt
atcggcgaggtcgtcgcccgcgccatcgtcgagttctacaaggagccgcgcaacagcgag
gtcatcgagcgactgctgcgtgaggtgcgcccgcaggatgccgagaagcccaaggcgtcc
ggaagcccggtggccgggaaaaccgtggtcttcaccgggacgctggaaaagatgacgcgc
gacgaggccaaggcgacggcggagagcctcggtgccaaggtggcgggatccgtctcgaaa
aagaccgatatcgtcgtcgccgggcccggtgctggctccaagctcgacaaagcgcgcgag
ctcggagtgcagacgatggacgaggacgagtggctggcgctgatcgggtga
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