Rickettsia typhi Wilmington: RT0706
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Entry
RT0706 CDS
T00193
Symbol
lig
Name
(GenBank) DNA joinase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rty
Rickettsia typhi Wilmington
Pathway
rty03030
DNA replication
rty03410
Base excision repair
rty03420
Nucleotide excision repair
rty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RT0706 (lig)
03410 Base excision repair
RT0706 (lig)
03420 Nucleotide excision repair
RT0706 (lig)
03430 Mismatch repair
RT0706 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rty03032
]
RT0706 (lig)
03400 DNA repair and recombination proteins [BR:
rty03400
]
RT0706 (lig)
Enzymes [BR:
rty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RT0706 (lig)
DNA replication proteins [BR:
rty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RT0706 (lig)
DNA repair and recombination proteins [BR:
rty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RT0706 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RT0706 (lig)
MMR (mismatch excision repair)
DNA ligase
RT0706 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RT0706 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
PX
Motif
Other DBs
NCBI-ProteinID:
AAU04165
UniProt:
Q68W27
LinkDB
All DBs
Position
complement(901463..903544)
Genome browser
AA seq
693 aa
AA seq
DB search
MQNIDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHL
VLSNSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPIFC
EPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPHKIDNAPEFLEVRGEI
YIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNL
ASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFA
MQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSR
ATLHNFQDIARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKL
RYVSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKRLISNPLDIF
FLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLA
REFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV
LNIEDYKETREQNILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTDLLIVGV
NGGSKLKKAKELNIKIIDEAEWLAFIKCLEKEV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaaaaagaagctaaaaaattattagaagaactcgct
gataaaatagcgatgtataatcatgcttattatatagaagataatccgttagtctcagat
tcggagtatgatcagctatttaatctcaatcttaaattagagaatacatttcctcattta
gttttaagcaatagtcctagcaagaaaataggggcgaaaatcacaaataaatttgctaaa
gttatacatcaagcacctatgctatctcttagcaatgcttttgatgaagaggatataaga
gattttttagaacgtataaaaaattttttacgcattaatgagtttactcctatattttgt
gaacctaaaatagatggtttgtctttttctgctatttataagcatgggttgtttataact
ggagcaacaagaggtgatggatatgttggtgaagatataacgattaatatcaaaacaata
aaaaatttcccgcataaaatagataatgctcctgagtttttagaagtacgcggtgaaatt
tatattgagaaacaagattttgttaatctcaataaagaacaagaagcgcagaacagaggg
aaatttgctaatcctcgtaatgctgcagcagggtctattcgtcaacttgatgttgctatt
acagctcaaagaccgctaaaatattttatatattcaggtggggtaactgagaagaatctt
gcgtctacacaagagcaattacttgcaaaattgaaggcgttaagttttagcgttaacgaa
atatctaaacttgcaagctctgaagaagaaatttttgctttttatgaatatctcaaaaca
aataggcataatttaccttatgaaattgatggggtagtatataagctcaataattttgca
atgcaaaatagaatgggatttattgcacgatctccacgttttgctattgctcataaattt
cctgctataataggacaaacaaagctgctttccattacggtgcaagttggtagaacaggt
atgttaacgcctgtagcagaacttgaccctctagaaataggtggggtcgttgttagtaga
gcaacactacataactttcaagatattgcacgaaaagatgtgcgtattaaagattatgta
tttttgcaacgtgctggtgatgttattcctcaaatcacaggcgttgatataagcaaacgt
tcgaatgatactgtaaagtttgatactcctgtattttgtccatcatgtaattctaaattg
cgttatgtgtctgaagatattattatacgctgtgataacggtcttaactgtcctgctcag
aattatgagcgtatctgtcattttgtatcaaagaatgccatggatattgcaggacttgga
cgtaagcaagtcgcatttttaatagataagaggttaattagtaatccacttgatattttc
tttttaaaaaagaaaaatgaaacaaacttaattagactagagaatatggatggctggggt
aagaaatcagtagcaaatctttggcaaaatatagaaaaatcacaaaaaattagcttgcaa
cggttcatatatgctctaggtattaggcatatcggtgaacaaaacgcaaaattacttgct
agagaatttgtgagctataataattttatagctcaaatggaattgctgagcaaaaacgat
tctgatgtttatcaaaagctaaatgatttagaagggatcggtgataagatgctagtagat
attattgattttttttacgttaaagaaaatatacaacttatcaaaaaacttggtgcagta
ttaaatatcgaagattataaagagactagagaacaaaatattttaacaggtaagatatta
gtatttactggtagtttaaaaacgatatctagagtcgaagctaaagaaatagctgaaaag
cttggtgctaaagttgcatctagcgtatcatcaaacacggatttattaatagtaggtgtg
aacgggggaagtaagcttaaaaaagctaaggagcttaatattaaaattattgatgaagca
gaatggcttgcattcataaaatgcttagaaaaagaagtttag
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