Rickettsia typhi Wilmington: RT0731
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Entry
RT0731 CDS
T00193
Symbol
nth
Name
(GenBank) AP endonuclease class I
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
rty
Rickettsia typhi Wilmington
Pathway
rty03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RT0731 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rty03400
]
RT0731 (nth)
Enzymes [BR:
rty01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RT0731 (nth)
DNA repair and recombination proteins [BR:
rty03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RT0731 (nth)
Prokaryotic type
RT0731 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
HHH_5
RecR_HhH
Translat_reg
Ogg-HhH
UCR_UQCRX_QCR9
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
AAU04188
UniProt:
Q68W04
LinkDB
All DBs
Position
931314..931952
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AA seq
212 aa
AA seq
DB search
MQAQIVNKIFEIFSKNNPKPQTALIYKNDFTLLVAVILSARATDISVNLVTKHLFETYNT
PEKILALGEEGLKKYIKSIGLFNSKAKNIIASCQILIKNYQASIPNDFKELVKLPGVGRK
TANVVLNCLFAMPTMAVDTHVFRVSKRIGLAKGNTTVIVEKELLQIIDEKWLTHAHHWLV
LHGRYICKARKPSCRICHIKEYCEYYINTFAS
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcacaaatagtgaataaaatttttgagatttttagcaaaaataatccaaagcca
caaactgcattaatatataagaatgactttaccttattggtggcagtaatattatcggct
cgagctactgatatatcagtaaatttagtgacgaaacacttatttgaaacttataataca
ccagaaaaaattttagcactaggtgaagaaggactgaaaaaatatataaaatctataggg
ttatttaatagcaaagcaaaaaatattatcgcatcatgtcaaatattgataaaaaattat
caagcttcaataccaaatgattttaaggaattagttaaactaccaggagttggcagaaaa
actgcaaacgttgtactaaattgtctttttgctatgcctacaatggcagttgatacacat
gtttttagagtatcaaaaaggattggacttgcgaaaggcaatactactgtaatagtagaa
aaagagctattacaaattatcgatgagaaatggctaacacatgcccatcactggctagtt
ctacatggaagatatatttgtaaagcgagaaaaccaagttgtcgcatctgccatattaaa
gaatactgtgagtattatataaatacatttgcaagttaa
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