Ruegeria sp. AD91A: D1823_05675
Help
Entry
D1823_05675 CDS
T05627
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rua
Ruegeria sp. AD91A
Pathway
rua03030
DNA replication
rua03410
Base excision repair
rua03420
Nucleotide excision repair
rua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1823_05675 (ligA)
03410 Base excision repair
D1823_05675 (ligA)
03420 Nucleotide excision repair
D1823_05675 (ligA)
03430 Mismatch repair
D1823_05675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rua03032
]
D1823_05675 (ligA)
03400 DNA repair and recombination proteins [BR:
rua03400
]
D1823_05675 (ligA)
Enzymes [BR:
rua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1823_05675 (ligA)
DNA replication proteins [BR:
rua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1823_05675 (ligA)
DNA repair and recombination proteins [BR:
rua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1823_05675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1823_05675 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1823_05675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1823_05675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AXT26106
UniProt:
A0A346SFE3
LinkDB
All DBs
Position
complement(1124130..1126382)
Genome browser
AA seq
750 aa
AA seq
DB search
MSNLTSISELTEDEARAELARLAELLSKANTLYHTADAPDMSDAEYDALKRRNAEIEARF
PYLKRSDSPTDQVGAKPADGFSKVTHAVRMMSLGNAFDDEDVADFDRSIRKYLGLGFGES
LAYTAEPKIDGLSLSLRYEKGQLVQAATRGDGEVGENVTANARTVSDIPQHLQNAPEVLE
VRGEVYMSHPDFEALNARQAERGGKPFANPRNAAAGSLRQLDSEITRSRPLRFFAYAWGE
VSQPLADSQMGAIERLKSLGFSTNPLTRLCATTHEILDHYRNIEAQRSTLGYDIDGVVYK
VNDLSLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYIAGRDAKGGTIRDGKDIRVGDWVQVYRAGDVIPKLSDVDLSKRPPGS
QTFAFPTRCPECHSEAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDIEGLGAKQI
EMFYDDPILPIKTPTDIFTLEQRDKGNLARLKNRDGWGETSARNLFAAIDEKRTIPFARL
LFALGIRHVGEVGARDLALYYRDWETLTQALDAAHPAALAQRQADEAEDAERAAALAEGR
RARVKEARDAAITAACVPPDANATWAELIGIDGIGATLGLSLSDAFSNVEERRAFDTLRK
ELTVIAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDILVAG
PGAGSKAKKAAELGIETLDEDGWLQLIEGA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacttaacttccatatccgagctgacagaagatgaggcacgtgccgagcttgca
cgtctggccgaactgttgtcgaaagcaaatacgctgtatcacacggctgacgcgcctgac
atgtcggatgcggagtatgatgctctcaagcgtcgcaatgctgaaatagaagcgcgcttc
ccctatctcaagcgttccgacagcccgacggatcaagtgggtgcaaagcctgctgacggt
ttttcgaaggtgacgcacgccgtgcgcatgatgtcgctgggcaatgctttcgatgatgag
gacgtggcagatttcgacagatcgatccggaaatatctgggccttggcttcggggaaagc
cttgcctacacagccgaacctaagattgatggcctgtctctgtcattgcgttacgaaaaa
ggacagcttgttcaggccgcgacgcgtggagatggtgaagtcggtgaaaatgtaacggcc
aatgcccgcacggtctccgatatcccgcagcacttgcaaaacgcacccgaggttctggaa
gtcaggggtgaggtttacatgtctcatccggatttcgaggcgttgaacgcgcggcaagca
gagcgcggtggcaaaccctttgccaatccgcgcaacgcggcggcggggtctttgcgacaa
ctggattcggaaatcacgcgctcgcgcccgttgcgttttttcgcttatgcctggggagag
gtttcgcaaccattggccgactcgcagatgggggcgatcgagcggcttaaatcacttgga
ttttcgacgaatcctctgacccgtctttgcgcaacgacgcacgagatattggatcattat
cgcaatattgaagcccaacgttccaccttgggctatgacattgatggggttgtttacaag
gtgaatgatctgtcgcttcaggcgcgtttggggtttcgctcaaccacaccacgatgggcg
attgcacacaaatttccagccgaactggcatggacaaggttggaggcgatcgacattcag
gtcggtcgcacaggcgcgcttagcccggtcgcacggttgcatccagtgacggtgggcggt
gttgttgtttccaacgccactttgcacaacgaagactatatcgcgggacgcgatgccaag
ggcggcacgatccgcgatggcaaggatattcgtgtcggtgactgggttcaggtttatcgc
gccggggacgttattccgaagctgtctgatgttgatctgtccaaacgcccacctggttcg
caaacctttgcctttccaacgcgctgtccggaatgtcatagcgaggcgatccgcgaagaa
ggcgacgcagtccgccgctgcaccggtggcttgatttgccccgcgcaggccgttgaaaaa
ctgaagcatttcgtctcgcgcaaagcgtttgatattgaaggccttggcgcgaaacagatc
gagatgttctatgatgatccgatccttccgattaaaactccgacggatatctttacattg
gaacagcgtgacaagggcaatttggctcggctgaagaaccgggatgggtggggggaaacc
tcagccagaaatctgttcgccgcgatcgacgaaaagcgaaccattccgtttgcgcgcctg
ttgtttgctttgggtatccgacatgtgggtgaagtcggagcgcgtgatctggcgctgtat
taccgcgattgggagaccctgacacaagccctggacgccgcgcacccggcagctctggcg
caacggcaagcggatgaggcggaagatgccgaacgggcggccgcgctggcagaaggtcgt
cgggcgcgggtcaaggaagcgcgggatgcggcaatcaccgcggcgtgtgttccgccggat
gccaatgccacctgggcggaattgatcggaatcgatgggattggtgcaacacttggtctg
tctctgtccgatgcgttttcgaacgtggaagaaagacgcgccttcgatacattgcgcaag
gaattgacagtaatcgcacctgatgcaccggcatcagacagcccagtggcaggcaagacg
gttgtgttcaccgggacgttggaaaagatgacgcgcgccgaagccaaggcgcgggccgag
gcgttgggtgcgaaggtgtcaggttccgtcagcaagaaaaccgatattctggtcgccggt
cccggtgcgggttcgaaagccaagaaagcggcagagctgggtatcgaaaccctggatgag
gatggctggttgcagctgatcgaaggcgcatga
DBGET
integrated database retrieval system
