Rubrobacter tropicus: GBA63_20505
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Entry
GBA63_20505 CDS
T06510
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rub
Rubrobacter tropicus
Pathway
rub03030
DNA replication
rub03410
Base excision repair
rub03420
Nucleotide excision repair
rub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBA63_20505 (ligA)
03410 Base excision repair
GBA63_20505 (ligA)
03420 Nucleotide excision repair
GBA63_20505 (ligA)
03430 Mismatch repair
GBA63_20505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rub03032
]
GBA63_20505 (ligA)
03400 DNA repair and recombination proteins [BR:
rub03400
]
GBA63_20505 (ligA)
Enzymes [BR:
rub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GBA63_20505 (ligA)
DNA replication proteins [BR:
rub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GBA63_20505 (ligA)
DNA repair and recombination proteins [BR:
rub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GBA63_20505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GBA63_20505 (ligA)
MMR (mismatch excision repair)
DNA ligase
GBA63_20505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GBA63_20505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QIN84759
UniProt:
A0A6G8QE50
LinkDB
All DBs
Position
4159665..4161659
Genome browser
AA seq
664 aa
AA seq
DB search
MTEKTDVRGKIEDLREQVRYHNRRYHIEDSPEIPDAEYDALVSELESLEAEHPELVTPDS
PTQRVGGEPIEGFEEVRHAVPMLSLANARKTEDLREWDARVRRLLGEDETPRYVTELKID
GLAVSLRYENGRLVRGATRGNGTIGEDVSAQLRTIRSVPDRLDDDPPAVLEPRGEAYITL
ADFEKLNKRLEAEEKKTFANPRNLAAGSIRQLDPKVTARRPLTILLYGVGEGGEIFESHS
GMLAALKSYGLRVNPYRVHDDIDSVVSECEKWTRERESVGYQIDGVVVKVDSREQQLALG
SVAKSPRWAIAYKFEPLAGRTKLLDIIINVGRTGALTPQAVLEPVNVGGVTISKATLHNE
DYVKEKGILIGDEVVIERAGDVIPQVVKAVVEARDGSEREFAMPTHCPVCGEPVFRPEGE
AVTRCVNARCPAQALEHIIHWASKSAMDIDGFGEKLAKRLFDLGFIKDAADVYGLEAGQL
VPLDGFGEKSAENLIRAISKSKEQPFSRVLYALGIRHVGAVTAELIATRFSGEDLINGAT
VDGLAEIKGVGEVVARAVVEYFSLQDNQDLVRRLMDVGLNFEKEAGRPTEGPLAGKRVVI
TGTLEKPRSFYVERLEAAGGTFTSSVSKNTDYVLAGEDAGSKLERARELGVPLLDEAGFE
ELLS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgacggagaagacggacgttcggggtaagatcgaggacctgcgggagcaggtccggtac
cacaaccgccgttaccacatagaggactcgccggagatcccggacgccgagtacgacgcc
ctcgttagcgaactggagtcgctggaagccgagcaccccgagctcgtcacccccgactcg
ccgacccagcgcgtcggcggggaaccgatcgagggcttcgaggaggtccgccacgccgtc
ccgatgctctcgctggcgaacgcccggaagaccgaggacctgcgcgagtgggacgcccgc
gtgcggcgcctgctgggcgaagacgagacgccgcgctacgtcacggagctcaagatagac
ggcctcgcggtctcgttgcgctacgagaacggccggctcgtgcggggcgccacgcggggc
aacgggaccataggcgaagacgtctcggcccagctgcgaactatacggtccgtccccgac
cggctcgacgacgacccgcccgccgtcctggagccgcgcggcgaggcgtacataaccctc
gcggacttcgagaagctcaacaagaggctcgaagccgaggagaagaagaccttcgccaac
cccaggaacctggccgcggggtccatccggcagctagacccgaaggtgacggcccggcgg
cccctgaccatcctgctctacggcgtgggcgagggaggcgagatcttcgagagccactcc
ggcatgctcgccgccctgaaaagctacggcctgcgcgtgaacccttaccgtgtccacgac
gacatagattccgtcgtgtccgagtgcgaaaaatggaccagggagagggagtcggtcggg
taccagatcgacggtgtcgtggtcaaggtcgactcgcgggagcagcagctcgccctcggt
tccgtggcgaagtcgccgcggtgggccatcgcctacaagttcgagccgctggccggacgg
acgaagcttttggacatcatcatcaacgtgggacggacgggggcgctgacgccgcaggcc
gtgctcgagccggtcaacgtgggcggggtgacgatctccaaagccacgctgcacaacgag
gactacgtaaaggagaagggaatcctcatcggggatgaggtggtgatagagcgggcgggg
gacgtgatcccgcaggtcgtcaaagccgtcgtggaagcgcgggacgggagcgagcgcgag
ttcgcgatgccgacccactgcccggtctgcggcgagccggtcttccgccccgagggagag
gccgtcacccggtgcgtgaacgcccggtgcccggcgcaggcgctggagcacatcatccac
tgggcgtccaagtccgcgatggacatagacggcttcggcgagaagctcgcaaaacgcctc
ttcgacctcggcttcatcaaggacgcggccgacgtgtacgggctcgaagcggggcagctc
gtaccgctcgatggcttcggcgagaagagcgcggagaacctgatccgggcgatatccaag
agcaaggaacaacccttctcccgcgtcctctacgccctcggcatccgccacgtcggggcc
gtcaccgccgagctcatagcgacccgcttctccggagaggacctgataaacggcgcaacg
gtcgacgggctggccgagatcaaaggcgtgggagaggtggtcgcccgcgccgtcgtcgag
tacttctcccttcaagacaaccaggacctcgtccggcgcctgatggacgtgggcctgaac
ttcgagaaggaggccggccgccccacggaaggaccgctcgccggaaagcgcgtagtcata
accggcaccctggagaagccccgcagcttctacgtcgagcgactggaagcggccggcgga
accttcacctcctcggtcagcaagaacacagactacgtcctggccggagaagacgcgggc
tcgaagctggagagggcaagggagcttggcgtcccgcttctggacgaggccggtttcgag
gagctgctctcctaa
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integrated database retrieval system
