Ruminococcus sp. FMB-CY1: LCN94_04405
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Entry
LCN94_04405 CDS
T10118
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ruc Ruminococcus sp. FMB-CY1
Pathway
ruc03030
DNA replication
ruc03410
Base excision repair
ruc03420
Nucleotide excision repair
ruc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCN94_04405 (ligA)
03410 Base excision repair
LCN94_04405 (ligA)
03420 Nucleotide excision repair
LCN94_04405 (ligA)
03430 Mismatch repair
LCN94_04405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ruc03032
]
LCN94_04405 (ligA)
03400 DNA repair and recombination proteins [BR:
ruc03400
]
LCN94_04405 (ligA)
Enzymes [BR:
ruc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCN94_04405 (ligA)
DNA replication proteins [BR:
ruc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCN94_04405 (ligA)
DNA repair and recombination proteins [BR:
ruc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCN94_04405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCN94_04405 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCN94_04405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCN94_04405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WBX58355
LinkDB
All DBs
Position
876366..878348
Genome browser
AA seq
660 aa
AA seq
DB search
MDIILAEQRIKELTKTIEYHNNRYYNLDNPEISDYDYDMLLRELENLENDFPTLKSPLSP
TNKVGGERGEKFSPVTHIVPMESLHDSFSHSELFDFDRRVREVAPKVKYVVEPKFDGLSV
SCEYRNGVFVRGSTRGDGTVGEDVTDNLMTIRSLPKKIENAPAFLEVRGEVYMSFDSFNE
LVKEQEDNEEKPFKNPRNAAAGSLRQKNSKITAKRKLDIFVFNIQQIEGAEITSHHQGLD
YLTELGFPTAFYNIFDDMQEAVEEIERIGNMRGTFDYAIDGAVVKVDDFATRELLGSTAK
YPKWAEAYKYPPEEKATKLLEVEINVGRTGVLTPVGIFEPVFLAGTTVSRATLHNKDFID
EKGICVGDTVIIRKAGEIIPEVLSVKEHGENAVPFEFPKLCPSCHTPVVRDENEAAIRCT
NTDCPAQLMRHLIHFVGRDAMDIDGLGPAVLEQLVNEGLIKSPADLYRLTVDSITALDRK
AEKSAQNLINSIEKSKHNELYRLVFALGIRNIGLKAAKLLCENFANIDDLMNAKTEDISA
IEGFGLIMAESVVNYFSAESTKNLIDELKELGLEMKPSEQKKKGGILEGKTFVLTGTLPT
MKRSEAGKLIEQNGGKTSSSVSKKTDYVLAGEDAGSKLTKAQQLGIAIISEEELLNMLAE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggatataattttggcagaacaaagaataaaagagcttacaaagacgattgagtatcac
aataatcgttattataatctcgataatcccgaaatttccgattacgattatgatatgctt
ttgcgtgagcttgaaaaccttgaaaacgattttcctacactcaagtcaccgctttcgccg
acaaataaagtaggtggcgagcgtggagaaaaattctctcccgtaactcacatagtgcct
atggaaagtttgcacgacagcttttctcactcggaattgtttgattttgacagaagagtg
cgtgaggttgctccgaaagtaaaatatgttgttgagccaaaatttgacggtctttccgta
tcttgcgagtatcgcaacggtgtatttgttcgaggttcgacaagaggtgacggaacagtc
ggtgaagatgttacggataatcttatgacaatacgctcactcccgaaaaagattgaaaat
gcgcctgcatttttagaggtgcgtggcgaagtttatatgtcttttgacagctttaacgaa
cttgtcaaggaacaggaagataacgaagaaaagccgtttaaaaatccgagaaatgccgcc
gcaggttcattaaggcaaaaaaattctaagattaccgcaaagcgcaagctcgatattttt
gtgtttaatatccagcagattgagggcgcagagattacaagccaccaccaaggccttgat
tacctcacagagcttggttttcctaccgctttttacaatatttttgacgatatgcaagag
gctgttgaagaaattgagcgtataggaaatatgcgaggtacatttgattatgcgattgac
ggtgcggttgtaaaggttgatgattttgcaacaagagaattattgggcagtaccgcaaaa
tatccgaaatgggcggaggcatataaatatccgcccgaagaaaaggcgacaaaattgctt
gaagttgaaataaatgtcggcagaacaggcgtgcttactcctgtcggaatttttgaacct
gtatttcttgcgggtacgacagtaagccgtgcaacgctccacaacaaagattttatagat
gaaaaaggtatttgcgtaggtgatacggtaattatccgtaaagccggagagattattccg
gaggttctttctgtaaaagaacacggcgaaaatgcggtgccttttgagtttccgaaactt
tgtccgtcctgtcacactcctgttgtgcgtgacgaaaatgaggctgctattcgctgtaca
aacaccgattgccctgcccagcttatgcgacaccttatccattttgtaggcagagatgct
atggatattgacggcctcggacctgctgtgcttgaacagcttgtgaatgagggactgata
aaatctcctgccgacctttacagattaacggttgacagcataaccgcccttgacagaaaa
gccgaaaaatctgcgcaaaatcttattaattcaattgaaaaatcaaaacacaatgaatta
tatcgccttgtttttgcacttggcatcagaaatataggtcttaaagccgcaaaactttta
tgcgaaaattttgcgaatattgatgaccttatgaatgcaaaaacagaggatatttccgca
atagagggctttggcctgattatggcggaaagcgtagtgaattatttttctgccgaaagc
acaaaaaatctgattgacgaactgaaagaactcggacttgaaatgaaaccgtccgaacag
aagaaaaagggcggaattcttgagggcaaaacctttgttcttacaggcactctgccgact
atgaaaagaagtgaggcaggcaaactgattgagcagaacggcggaaaaacaagctcttcc
gtatctaaaaaaaccgactatgtgcttgcgggcgaagacgccggaagtaaactgacaaaa
gcacagcaactcggtattgcaattatttcggaagaagaattattaaatatgcttgctgaa
tga
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