KEGG   Rufibacter sp. DG15C: TH61_15730
Entry
TH61_15730        CDS       T04326                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rud  Rufibacter sp. DG15C
Pathway
rud03030  DNA replication
rud03410  Base excision repair
rud03420  Nucleotide excision repair
rud03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rud00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TH61_15730
   03410 Base excision repair
    TH61_15730
   03420 Nucleotide excision repair
    TH61_15730
   03430 Mismatch repair
    TH61_15730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rud03032]
    TH61_15730
   03400 DNA repair and recombination proteins [BR:rud03400]
    TH61_15730
Enzymes [BR:rud01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TH61_15730
DNA replication proteins [BR:rud03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TH61_15730
DNA repair and recombination proteins [BR:rud03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TH61_15730
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TH61_15730
   MMR (mismatch excision repair)
    DNA ligase
     TH61_15730
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TH61_15730
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia BRCT_2 Auto_anti-p27 Dynactin_p22 F54D1_6_C Zn_Ribbon_TF
Other DBs
NCBI-ProteinID: AMM52349
UniProt: A0A127B6B3
LinkDB
Position
3665282..3667333
AA seq 683 aa
MPEQNIQARILELTSRLNYLNYQYYQNSVSEVSDYEFDQMLAELQQLEEAHPEYKSDNSP
TQRVGGTITKNFPTVKHKYPMLSLSNTYSEEEVREFDARVQKVIGGTVEYVCELKFDGVA
MSLTYANGALTAGVTRGDGTRGDDITPNVRTIRTVPLHLQGQDVPPEVEIRGEVFMPFHV
FEELNKEREEIGEALMANPRNATSGTLKLQDSKEVARRRLSMFAYGLLSTPTLFESHSES
LEALQRWGLNVSPTWKKCSTIEEVMAFIQEWETKRFELPIATDGIVVKVNSYAQQEELGY
TAKSPRWAMAYKYKAMEAVTELLGIEYNVGRTGAVTPVALMKPVLLAGTTVKRASLHNAN
EIERLGLMLHDHVMVEKGGEIIPKVTAVKIELRPEIATPIVYPTVCPACNTPLVRSEGEA
NHYCPNEKGCPPQVKGKLEHFISRKAMNIMSLGEGKIELLVEQGLVTSPDHLYDLTYDTL
FGLKKTFVNEETGKSRVVTFQKTTVDNILKALEKSKEAPFDRVLFALGIRFVGNTVAQKL
AQHFRNIDALHAATEEELIAVPEIGWRIAASVREYFQDVAHLHVIERLKHHGLQLDLGEL
AVVEPASDKLAGQTFVVSGVFTGYSRDELQDTIIAHGGKIVSSISKKLSFLVAGDKMGPS
KLEKATSFGVKIITEEEFNLMIA
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgcctgagcagaacatacaagcccgcattctagagttgaccagccgcctgaactacctc
aactaccagtactaccagaacagcgtctctgaagtctctgactatgagtttgaccagatg
ctcgccgaactgcagcagttagaggaggcgcatccagaatataaatcagacaattctcct
acccagcgtgtgggtgggaccatcaccaagaatttccctacggtcaagcacaaataccct
atgttgtccttgagcaacacctactctgaggaagaggtgcgggagtttgacgctcgggtg
caaaaagtcattggcggcacggtagaatatgtctgcgaactcaagtttgatggcgtggcc
atgagcctcacctatgccaacggtgccttaacggctggcgtcacccgcggcgatggcacc
cgtggcgatgacatcacgcccaacgtgcgcaccatccggactgtgcctttgcaccttcag
ggccaggatgtacccccagaagttgaaatacgtggcgaggtgtttatgccctttcatgtg
tttgaggaactgaacaaggagcgcgaggaaattggcgaggccctgatggccaaccctaga
aacgctacctctggcactttaaaattacaggactctaaagaagtagcccgccggcgcctg
agcatgttcgcttatggtttgttgagtacgcctactttgtttgagagccattctgaaagc
ctggaggccctgcagcgctggggattgaacgtgtcccctacctggaagaaatgcagcacc
attgaagaagtaatggccttcatacaagaatgggaaaccaagcgctttgaactgcctatt
gccacagacgggatcgtggtcaaagtaaactcttatgcccagcaagaggaattggggtac
accgctaaaagtccgcggtgggccatggcatataaatacaaagccatggaagccgtcacg
gagctactgggcatagaatacaacgtgggacgtaccggggcagtgacgcccgtggccttg
atgaaaccagtattgctagcaggcactaccgtcaagcgcgcctctttgcacaacgccaat
gagattgagcgcctgggattgatgctgcatgaccacgtgatggtagagaaaggcggcgaa
atcatcccgaaggtgacggccgtgaaaatcgaacttcgaccggaaattgccacgcccatc
gtttaccctacggtctgcccggcttgtaacacccccctggtgcgctcagaaggcgaagcc
aaccattattgtcccaatgagaaaggctgcccgccgcaggtaaagggcaagctggagcat
ttcattagtcgaaaggccatgaacatcatgagcctgggcgagggcaagattgaattgttg
gtggaacaaggcctggtgaccagccccgaccatctgtatgacctcacgtatgacacactc
ttcgggcttaagaagacctttgtcaatgaagaaaccggcaagagccgcgtagtcactttc
cagaagacaacggtagacaacatcttaaaagcgttggagaagtccaaagaggctccattt
gaccgcgtgctttttgctctgggcatccggtttgtgggcaacacggtggcccagaagttg
gctcagcacttcaggaacattgacgctttgcacgccgctacagaagaagaactgattgcc
gtcccagagattggctggcgaattgcggcctcggtgcgggaatatttccaggatgtggca
cacctgcatgtgattgagcgcctgaaacaccacggcctgcaactggatttaggggaactg
gccgtagtggagcccgcctcagataagttggcaggacagacctttgtcgtgtcaggggtg
tttaccggctattccagagatgaactgcaggacaccatcatcgcccacggtggaaaaatc
gtctccagcatttctaaaaaactatccttcttagtagctggcgacaagatgggccctagc
aaattggaaaaagccacatcctttggcgtgaaaattattacggaggaagaatttaacctg
atgattgcctaa

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