Rugamonas sp. DEMB1: QC826_23440
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Entry
QC826_23440 CDS
T08988
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
rug
Rugamonas sp. DEMB1
Pathway
rug03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QC826_23440 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rug03400
]
QC826_23440 (nth)
Enzymes [BR:
rug01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
QC826_23440 (nth)
DNA repair and recombination proteins [BR:
rug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QC826_23440 (nth)
Prokaryotic type
QC826_23440 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
H2TH_5
Motif
Other DBs
NCBI-ProteinID:
WGG49481
LinkDB
All DBs
Position
5090083..5090730
Genome browser
AA seq
215 aa
AA seq
DB search
MNNAKRLDMFTRFRAANPKPVTELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVANT
PAKILALGLDELTEYIRTIGLYKTKAKNVIATCKILQEQHGGEVPRDRASLEALPGVGRK
TANVVMNTAFGEPTMAVDTHIFRVANRTGLAPGKNVDIVEQKLLKFVPKEFLHDAHHWLI
LHGRYTCMARKPLCWNCMVADLCDYRAKTPAPADA
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgcaaaacgactggacatgttcacgcgcttccgcgccgccaatccgaaaccc
gtcaccgagctggagtacaccacgccgttcgagttgctgatcgccgtgctgctgtcggcc
caggccaccgacgtcggcgtcaacaaggcgacgcgcaagctctatccggtggccaacacg
ccggccaagatcctggcgctgggactcgacgagttgacggaatacatacgcaccatcggc
ctgtacaagaccaaggccaagaacgtcatcgccacctgcaagattttgcaggagcagcac
ggcggcgaggtgccgcgcgaccgcgcttcgctcgaggcgctgcccggcgtcggccgcaag
accgccaacgtggtgatgaacaccgccttcggcgagccgaccatggcggtcgacacccac
atcttccgcgtcgccaaccgcaccggcctggcgccgggcaagaacgtcgacatcgtcgag
cagaagctgctcaagttcgtgcccaaggagtttttgcacgacgcccaccactggctgatt
ttgcacggccgctacacctgcatggcgcgcaagccgctgtgctggaactgcatggtggcc
gacctgtgcgactaccgcgccaaaacgccggcgccggccgacgcctga
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