Roseimaritima ulvae: UC8_23160
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Entry
UC8_23160 CDS
T06179
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rul
Roseimaritima ulvae
Pathway
rul03030
DNA replication
rul03410
Base excision repair
rul03420
Nucleotide excision repair
rul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UC8_23160 (ligA_2)
03410 Base excision repair
UC8_23160 (ligA_2)
03420 Nucleotide excision repair
UC8_23160 (ligA_2)
03430 Mismatch repair
UC8_23160 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rul03032
]
UC8_23160 (ligA_2)
03400 DNA repair and recombination proteins [BR:
rul03400
]
UC8_23160 (ligA_2)
Enzymes [BR:
rul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UC8_23160 (ligA_2)
DNA replication proteins [BR:
rul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UC8_23160 (ligA_2)
DNA repair and recombination proteins [BR:
rul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UC8_23160 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UC8_23160 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
UC8_23160 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UC8_23160 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QEG40309
UniProt:
A0A5B9QQX0
LinkDB
All DBs
Position
3187911..3189914
Genome browser
AA seq
667 aa
AA seq
DB search
MTSSTAAQRVQDLREQIRTHDRLYYVEAQPQITDLEYDRLLAELKQLETEHPELASPDSP
TRRVGDAPVPHLEQVAHRLPMLSIDNTYSLEELAAYFERAAKLLPDETIEWVMEYKIDGV
AASIIYEDGLLVRALTRGNGKVGDDITHNIRTVGGVPLRLSGDQVPTVLEVRGEVYMTND
DLVELNLRQAAAGLPAYKNTRNVTAGTIRLLDSRIAAERRLRFFCHGVGYAEGLQATDHV
SFLHEVGLLGLPPTPNVRRLANSAEAMQAAQSLEEDMPTIDFEVDGIVFKVNNFVQREAL
GSTSKSPRWLIAYKRERYEATTVLERIEVQVGKTGAITPVAYLQPVDIADTTVSRASLHN
ADEIERLDVREGDTVVVEKAGKIIPKVVRVEKHLRDQPLQPFVFPTACPECNTTLQRDEG
GVAIRCPNPSCPAQLRQRIAFFASRTGMDIDGLGEKLIDQLVSKGIVRHYHDLYGMQAEE
FIAHLDKVKTRKASSLVNAIEATRDRGLARVLTAVAIRHVGPRAAYRLTQAYPSLEALRE
ASEEQLAAIDEVGPVIAKSVRDYLHSDYGRATLDGLQQAGVRMTEEVADTSDLPLQGKTF
VVTGTLQRYKRDEIKQRIEALGGRASGSVSSNTDYLIAGAKAGSKKAKAEKLNVPVIDED
QFDELCQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaccagctccaccgccgcacaacgtgtccaagatctgcgggaacaaatccgcacccac
gaccggctgtattacgtcgaggcccagccgcagatcacggacctggaatacgaccgtttg
ctggccgaattgaagcagttggagaccgagcacccggaattggctagccccgacagcccg
actcgccgcgttggcgacgctccggtcccccatttggagcaggtcgcccaccgactaccg
atgctgtcgatcgacaacacctacagcctggaagagctggcggcgtattttgaacgagcg
gcgaaactgctgcccgacgagacgatcgagtgggtgatggagtacaaaatcgatggcgtg
gcagcctcgattatctatgaagacggtttgctggtgcgggccctcacccgcggcaacggc
aaggtcggcgacgacatcacgcacaatatccgcaccgtcggcggggtcccgctgcggctc
agcggggaccaagtgccgactgtgctggaagtccgcggcgaggtctacatgaccaacgac
gacctggtggaattaaatctgcggcaagccgcggccggattgccggcctacaaaaacact
cgcaacgttaccgccggaacgatccggctgctcgattcgcgaatcgcggccgagcggcgg
ttgcgatttttctgccacggggtcggttatgccgaagggttgcaggccaccgaccacgtc
agcttcttgcacgaggtcggactgctgggcttgccgccgacgcccaacgtgcgacgcctg
gcaaactccgccgaagcgatgcaggctgcgcagtcgttggaagaagacatgccgacgatc
gatttcgaagtcgacggcatcgtgtttaaggtgaacaactttgtccaacgcgaagccctg
ggcagcacttccaaaagtccccgctggttgatcgcttacaaacgcgaacgttacgaagcg
accacggtgctggaacggatcgaagttcaagtcggcaagacgggcgcgatcactccggtc
gcgtatctgcaaccggtcgacatcgccgatacaacggtcagtcgcgcctcgttgcacaac
gccgacgaaatcgagcggctggacgtccgcgagggcgatacggtggtcgtcgaaaaagcc
ggcaagatcatccccaaggtggttcgcgtggaaaaacatctgcgcgatcagccgctgcag
ccctttgtgtttcccactgcatgtcccgaatgcaacaccacgctgcagcgcgatgaaggc
ggcgttgcgatccgctgtcccaacccttcctgtcccgctcaattgcggcaacgcatcgcg
ttttttgccagccgcaccggcatggacatcgacggcttgggcgaaaaactgatcgaccaa
ttggtcagcaaaggcatcgtgcggcattatcacgatctgtacgggatgcaggccgaagaa
ttcatcgcgcatttggataaggtcaaaacccgtaaggccagcagtctggtcaacgccatc
gaagccactcgcgaccggggcttggcccgcgtactgacggccgtggcgattcgtcacgtc
ggtccccgcgcggcctatcgtttgacccaggcctatcccagtttggaagcgctccgcgaa
gcgagtgaagaacagttggccgccatcgatgaggtcggcccggtgatcgccaagagtgtc
cgcgactacttacacagcgattacggtcgcgccacgttggatggcttgcagcaagccggc
gtgcggatgaccgaagaggttgccgacaccagtgatcttccgctgcaaggcaaaacgttc
gtggttaccggcacgctgcagcgttacaaacgggacgagatcaaacagcgaatcgaagct
ttgggcggacgggcatcgggcagtgtcagcagcaataccgactatctaatcgccggcgcc
aaagccggcagcaaaaaagccaaagccgaaaagctgaacgtgcccgtgatcgacgaagat
caattcgacgaactctgccagtag
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integrated database retrieval system
