KEGG   Runella rosea: DR864_08915
Entry
DR864_08915       CDS       T05537                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
run  Runella rosea
Pathway
run03030  DNA replication
run03410  Base excision repair
run03420  Nucleotide excision repair
run03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:run00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DR864_08915
   03410 Base excision repair
    DR864_08915
   03420 Nucleotide excision repair
    DR864_08915
   03430 Mismatch repair
    DR864_08915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:run03032]
    DR864_08915
   03400 DNA repair and recombination proteins [BR:run03400]
    DR864_08915
Enzymes [BR:run01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DR864_08915
DNA replication proteins [BR:run03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DR864_08915
DNA repair and recombination proteins [BR:run03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DR864_08915
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DR864_08915
   MMR (mismatch excision repair)
    DNA ligase
     DR864_08915
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DR864_08915
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 Nlig-Ia PTCB-BRCT HHH BRCT_2 Auto_anti-p27 Zn_ribbon_Top1 Zn_Ribbon_TF
Other DBs
NCBI-ProteinID: AXE21475
UniProt: A0A344TS54
LinkDB
Position
complement(2085176..2087287)
AA seq 703 aa
MQNPAERINELTDLLNHYNHRYYQDSVSEISDYEFDTLLKELAELENQYPDLRREDSPTL
RVGGGITKNFETVTHRYPMLSLGNTYNEQDLRDFDERVQKGLYGEAYEYICELKFDGISL
SMTYENGVLKRAVTRGDGTRGDDITANVRTIKSLPLKISSRTQNSDSPLTAHQLPITNFE
VRGEGFMPISSFEKLNKDLEAADEPTYANPRNAASGAFKLQDSAESARRGLDCYLYAFLS
DDEVFETHEQSLLTLKTWGFNVSPGWRKCADIDEVLAYIHEWETKRHTLPLATDGIVIKV
NSMAQQRELGFTAKSPRWAISFKYKAENKAGVLKSVSYQVGRTGALTPVANLDNLNGDGK
GLQLSGTRVKRASLHNANEIERLGLMLNDVVFVEKGGEIIPKITGVDVDARSNRLLSPIV
YPTHCPECGTELVRKETEANHYCPNERGCPPQLRGKVEHFIHRKALNIDSLGEGKIELLF
DKNLVQIPADLYDLTYEKLFGLEKVITDEETGKTKKIGFKEKTVENILKGIEQSKNVPFK
QVLFGIGIRFVGATVAEKLAAYFRNIDALMAADFEALCNVPEIGGKIAQSIVDYFSEESN
RDYIGRLRAAGLQFETDDVPVVAESNALEGKSFLYTGTFAGMTREELEAKIEANGGKLLS
GVSAKLNFLIVGEKPGASKVDKATKLNVKMISEEEFLGMLSVD
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgcaaaatcctgccgaacgcatcaatgagcttaccgatttgctgaaccattataatcac
cgatattaccaagacagtgtctcggaaatcagtgattatgagtttgatacactcctgaaa
gagttggccgaactggaaaatcaatatcccgatttacgccgtgaagattctcctacgctg
cgggtaggagggggaattacgaaaaattttgagaccgtaacgcaccgttatccgatgctt
tcgttgggtaatacatacaacgagcaggatttgcgggactttgacgagcgtgtgcagaag
ggcctttatggcgaagcctacgaatacatttgtgagttgaaatttgacggtatttcgctc
agcatgacctacgaaaacggtgtgttgaagcgggccgtgacgcgcggcgacggtaccaga
ggagatgacattacggctaacgtacgtacaataaaatcgttgccgcttaaaataagctca
cgaactcagaattcggattcgccgctcaccgctcaccaattaccaatcaccaattttgaa
gtgcgcggtgaaggttttatgccgatatcatcgtttgagaaactcaacaaagatttagag
gcggccgacgaacccacctacgccaacccccgcaatgcggcatcgggggcgtttaaattg
caggattcggcggagtcggcgcggcgaggattggattgttatttgtacgcttttttatcc
gatgatgaggtgtttgaaacccacgaacaaagtcttctgacgcttaaaacatggggcttt
aacgtgtcgccgggctggcgaaaatgcgccgatattgatgaagtactggcctacattcac
gaatgggaaaccaagcgacacacattgccattggcgacggacgggattgtgattaaagta
aattcgatggcgcagcagcgggagttgggcttcacggccaaaagtccacgttgggcgatt
tcgtttaaatacaaagccgaaaataaggcaggcgttttgaaatcagtttcgtatcaggtg
ggccgtacgggggcgttgacgcccgtagccaatttagacaatctcaacggcgacggaaaa
ggtctacaactgtcgggaacgcgagtgaaacgcgcttcgctgcacaacgccaacgaaatt
gagcgcttggggttgatgctcaacgacgtggtttttgtggaaaaaggcggggaaattatt
cccaaaatcacgggagtggacgtggacgcccgctcgaaccgcctgttgtcgccgattgtt
taccccacgcattgccccgaatgtggtacggaattggtgcgaaaagaaaccgaagccaac
cattactgtcccaacgagcgcggttgtccgccgcagttgcgcggcaaagtggagcatttt
attcaccgcaaagccctgaatattgatagcttgggtgaaggaaaaattgaattgttgttt
gataaaaaccttgttcagatccccgccgatttgtatgatttgacctacgaaaaactcttc
ggattggagaaagtcataacggatgaagaaacgggcaaaaccaaaaaaatcggtttcaaa
gaaaaaaccgttgaaaatattctgaaaggcattgaacaatctaaaaatgttcctttcaaa
caggttctttttggcatcgggattcggtttgtgggcgcaacggtggctgaaaaactggcg
gcctactttcgtaacattgacgcgctgatggcggcagattttgaagccctgtgtaacgta
cccgaaatcggtggaaaaatagcccaaagcatcgtagattatttttcggaggagtctaat
cgtgattatatcggtcgtttacgggcggctggactacaatttgaaaccgatgatgtaccc
gtagtggctgaatccaacgcattggaaggtaaaagttttttgtatacaggcacttttgcg
ggcatgacccgcgaagaattggaagccaaaattgaagccaacggtggtaaactgctcagt
ggtgtatcggccaaactcaattttctgattgtaggcgaaaaaccaggcgcatccaaagtt
gataaggctacgaaattgaacgtaaaaatgatttcagaggaggagtttttagggatgtta
tctgttgattaa

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