Runella sp. SP2: DTQ70_04680 Help Entry DTQ70_04680       CDS       T05690                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rup  Runella sp. SP2 Pathway rup03030   DNA replication rup03410   Base excision repair rup03420   Nucleotide excision repair rup03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rup00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     DTQ70_04680    03410 Base excision repair     DTQ70_04680    03420 Nucleotide excision repair     DTQ70_04680    03430 Mismatch repair     DTQ70_04680  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rup03032]     DTQ70_04680    03400 DNA repair and recombination proteins [BR:rup03400]     DTQ70_04680 Enzymes [BR:rup01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      DTQ70_04680 DNA replication proteins [BR:rup03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      DTQ70_04680 DNA repair and recombination proteins [BR:rup03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      DTQ70_04680    NER (nucleotide excision repair)     GGR (global genome repair) factors      DTQ70_04680    MMR (mismatch excision repair)     DNA ligase      DTQ70_04680   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       DTQ70_04680 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden HHH_2 OB_DNA_ligase BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia BRCT_2 HHH Auto_anti-p27 HHH_3 DUF819 Motif Other DBs NCBI-ProteinID:  AYQ31519 LinkDB All DBs Position complement(1107731..1109821) Genome browser AA seq 696 aa AA seqDB search MSVADRINELTERLNFYNHRYYQDSVSEISDYEFDQLLEELASLENQYPDLKRPDSPTQR VGGTITKNFVTVEHRYPMLSLGNTYNEQDLRDFDERVRKGLNGADFEYVCELKFDGISLS MTYENGVLVRGVTRGDGVRGDDITANVRTIKTMPLKVQESKSNFALRPLPPAFEVRGEGF MPISSFEKLNKELEEADEQTYANPRNAASGAFKLQDSAESARRGLDCYVYYFLSDEEVFE THSESLEALKAWGFNVSPSWEKCATIDDVLAYIHQWEQKRHTLPLATDGIVIKVNSLAQQ RELGFTAKSPRWAIAYKYKAENKPGVLRSVSYQVGRTGALTPVANLDNLNEDGKGLWLSG TRVKRASLHNANEIERLGLMLNDVVFVEKGGEIIPKITGVDTAARASRSLTPIQYPTHCP ECATPLIRKEGEANHYCPNDRGCPPQIRGKIEHFIHRKAMNLDSLGEGKIELLFDKGLLQ TPADLYDLTYEKLFGLEKVITDEETGKTKRIGFKEKTVENILKGIEQSKQVSFKQVLFAI GIRFVGATVAEKLAAYFKNIDALMNADLEALRNVPEIGEKIAQSLIEYFADDQNRAYIER LRAAGLKMETDDLPVVMESNTLEGKTFLYSGTFASMSREQLENKIEANGGKLVSGVSGKL NFLIVGEKAGASKLDKATKLGVKMISETEFLEMLGE NT seq 2091 nt NT seq  +upstreamnt  +downstreamnt atgtctgtagccgaccgcattaacgaactgaccgaacgtctcaatttttacaaccatcgg tattaccaagatagcgtttctgaaatcagcgattacgagtttgaccaacttctggaagag cttgcttcgctcgaaaatcaataccccgacctcaaacgccccgattctcccacccaacgc gtaggagggactattaccaaaaattttgtaaccgtcgagcaccgttaccctatgctttcg ttgggaaatacctacaacgagcaagacctccgtgactttgacgaacgggtaagaaaaggg ctcaatggcgctgattttgaatacgtttgcgaattaaaatttgacggaatttcgctcagt atgacatacgagaatggtgtattagtacgaggtgtaactcggggcgacggcgttcgaggc gatgacatcacggccaacgtccgaaccatcaaaacaatgccgttgaaagtacaagagtcg aaatccaactttgcccttcgccccttgccccctgcgtttgaagtccgtggggaaggtttt atgcctatttcgtcctttgaaaaactcaacaaagaactcgaagaggccgacgaacaaacc tacgccaacccacgcaatgcggcgtcgggcgcgtttaaacttcaagattctgcggagtca gcacgacgtggattggactgttacgtatattattttttgagcgacgaagaggtgttcgaa acccattccgagagcctcgaagccctcaaagcgtggggcttcaacgtgtcgccttcgtgg gaaaaatgcgctaccatcgacgacgttctggcttacattcaccagtgggaacaaaagcgt catacgcttcctttggcgacggacgggattgttatcaaagtaaattcgctcgcccaacaa cgtgaattaggctttacggccaaaagtccgcgctgggcgattgcctacaaatacaaagca gaaaacaagccaggtgttttgcgttcagtttcgtaccaagtcgggcgaactggggctttg acgcccgtggccaacttagacaacctcaacgaagacggcaagggtctttggttatcgggc acccgcgtgaaacgtgcttccttgcacaatgccaacgaaatcgaacgccttggcctcatg ctcaacgatgtggtttttgtggaaaaaggcggtgaaatcatcccaaaaattacgggcgtg gacaccgcagcacgagcctcccgctcgctcacgcccatccaatacccgacgcactgtccc gaatgcgctacaccgctcattcgcaaggaaggcgaagccaaccactattgccccaacgac cgcggttgccctccccaaatccgtggtaaaatcgagcattttattcaccgtaaagccatg aatttggacagtttgggcgaaggaaaaattgagttattgttcgacaaaggactccttcaa acccccgccgatttgtacgaccttacctacgaaaagctgtttggtttggaaaaagtcatc accgacgaagaaacgggaaaaaccaagcgaattgggttcaaggaaaagacggttgaaaat attttgaaggggattgaacaatcaaaacaagtttcgttcaagcaagttttgtttgccatc ggaattcgttttgttggtgctacggtggccgaaaaattggctgcgtatttcaaaaacatc gacgcgctgatgaatgctgatttggaagcactgcgtaacgtccccgaaatcggtgaaaaa attgcccaaagtttgatagaatactttgccgacgaccaaaaccgtgcttacattgagcgt ctccgtgccgcaggtctcaagatggaaaccgacgaccttcctgtcgtaatggaatcaaac accctcgaagggaaaacgttcttatattcaggcacgtttgccagcatgagccgcgaacaa cttgaaaataaaattgaggccaacggcggaaaacttgttagcggggtttcgggaaaactt aacttcttgattgtgggtgaaaaagcgggagcttccaaactcgacaaagccacgaaatta ggcgtcaaaatgatttctgaaacggagtttttggaaatgttgggcgagtaa

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