Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00417
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Entry
RBI_I00417 CDS
T03158
Symbol
nth
Name
(GenBank) Endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RBI_I00417 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I00417 (nth)
Enzymes [BR:
rus01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RBI_I00417 (nth)
DNA repair and recombination proteins [BR:
rus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RBI_I00417 (nth)
Prokaryotic type
RBI_I00417 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
HHH_5
TRAFD1-XIAF1_ZnF
EndIII_4Fe-2S
DUF3349
HU-CCDC81_bac_1
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
CCO04145
UniProt:
W0U2Y2
LinkDB
All DBs
Position
I:458770..459396
Genome browser
AA seq
208 aa
AA seq
DB search
MTKKERAQMIVERLEQVYPEGICSLDYKKPHELMIAGRLSAQCTDARVNIVTKDLFAKYK
TIEDFANADVADIEEIIRPCGLYKTKARSIVAMCRQIMDNFGGEIPDTIEKLTTLAGIGR
KTANLVMGDVFHKPAVVTDTHCIRICGRLGLTKNKEPAKVEEDLKKILPPERSSDFCHRL
VLFGREYCKARGERCSECPLLDICGSRK
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaagaacgtgcacaaatgatagtggaaaggctggagcaggtctaccccgag
ggcatatgctcccttgactataaaaagccccacgagcttatgatagcaggcaggctttct
gcacagtgtacagacgcaagggtgaatatcgtcacaaaagatctttttgcaaaatataag
actattgaggattttgctaacgcagatgttgctgatattgaggagataatacgcccatgc
ggtctgtataaaacaaaagctcgctctatcgtagcaatgtgcagacagataatggataac
tttggcggtgagatacctgataccatagaaaagctcactacccttgcaggcataggcaga
aagacggcaaatcttgttatgggagatgtttttcataagcctgcggtggtaactgatacc
cactgtataaggatatgcggcagacttgggcttacaaaaaataaagagcctgcaaaggtg
gaagaggatctgaaaaagatacttccccctgagagatcctctgatttctgtcaccgcctt
gtactgttcggacgtgaatactgcaaggcaaggggagaacgctgcagcgagtgtccccta
cttgatatctgcggcagcagaaaatga
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