Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I00959
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Entry
RBI_I00959 CDS
T03158
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03030
DNA replication
rus03410
Base excision repair
rus03420
Nucleotide excision repair
rus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBI_I00959 (ligA)
03410 Base excision repair
RBI_I00959 (ligA)
03420 Nucleotide excision repair
RBI_I00959 (ligA)
03430 Mismatch repair
RBI_I00959 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_I00959 (ligA)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I00959 (ligA)
Enzymes [BR:
rus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBI_I00959 (ligA)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBI_I00959 (ligA)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBI_I00959 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBI_I00959 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBI_I00959 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBI_I00959 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
RNA_ligase
RNA_pol_A_CTD
HMBD
DUF4796_N
Zn_ribbon_NUD
HHH
5_3_exonuc
DUF1667
Nop10p
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CCO04674
LinkDB
All DBs
Position
I:complement(1081199..1083175)
Genome browser
AA seq
658 aa
AA seq
DB search
MNEQDAKKRIDELVKLLNYHSQLYYVEDRNEITDYEYDMLQQELKGLEEQFPQFIRSDSP
TQRVGGKAISIFEKVTHRVQMGSLQDVFSFEQVRSFIETVQQTVDKPQFVVEPKIDGLSV
SLEYHNGELAIGSTRGDGFVGEDVTSNLKTVKSIPIKINEELPLIEVRGETYMPRNIFLN
LVKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQIEGKELTSHKESLD
YLKTLGFKTIPDYKRVSTADEVIGCIKAIGEKRFDLPFDIDGVVIKVDDFRQREILGATA
KVPKWAVAYKFPPEEKTSKLLDIELNVGRTGAITPVAVFEPVFLAGTSVSRATLHNQDFI
REKNISVGDIIKVRKAGDIIPEVLGSVEKHGNGVFTLPECCPVCGTKLVKSEEEAAVRCP
NVECPAQIFRSIVHFASKGAMNIDGLGPQIVHTLLDNKLITSVADLYTLSENKLLQLDNF
KEKSVNNLLSAIEKSKSNSLDRLVFGLGIRNIGQASAKLLCDKFGDLDNIMNASAEQISE
IDGFGGVMAQSVYNAFHEEHMIELIQRLKECGINTKYEKIQIDDRFAGKTFVLTGTLPTL
KRSEAKALIEKYGGKASGSVSKKTDYVLAGEEAGSKLDKAQQLGIEIITEEQFKDMIK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgaacaggacgctaaaaaacgtatagacgagcttgtgaagcttttgaattatcac
tctcagctttactatgttgaggacaggaacgagatcacagactatgaatacgatatgctc
cagcaggaactaaagggtcttgaggagcagtttccgcagtttatcagaagcgactcccct
actcagcgtgtaggcggcaaggcgatatcaatatttgagaaagtcacacaccgtgtgcaa
atgggttctttgcaggacgttttttcctttgaacaggtgagaagctttattgagacagtt
cagcagactgtggataaaccgcaattcgttgttgagcctaaaatagacgggctttcggta
tcccttgaatatcataacggtgagcttgccataggttctacccgtggtgacggctttgtg
ggcgaggacgttacttctaatctgaaaactgtaaagtccattcctataaaaataaatgag
gaactgcctttgatagaagtcagaggtgaaacatatatgccgagaaatatttttctgaac
cttgttaaagagcaggaggataatgacgagcagcctttcaaaaatcctagaaacgccgcc
gcaggttctctcaggcagaaagaccctaagatagcggcaaaaagaaagcttgatatcttt
gtgttcaatgttcagcagatagagggcaaggagcttacttcccacaaggagtctcttgac
tatctgaaaacactgggatttaagactatccctgattacaagcgtgtgtctaccgctgat
gaggtcataggctgcataaaggctatcggagaaaagcgttttgacctgccattcgatatt
gacggcgttgttataaaggttgacgatttcagacagcgtgagatacttggtgcaactgca
aaagtgccaaagtgggctgttgcttacaagtttccgcctgaggaaaagacctcaaagctg
ctcgatatagagcttaacgtgggcagaactggtgctataacacctgtggccgtgtttgag
cctgtttttcttgcaggcacgagcgtttcaagggcgaccctacacaatcaggattttata
agagagaaaaacatttccgtgggtgatatcatcaaggtgcgcaaggctggagatataatc
cctgaggtacttggctctgtggaaaagcatggcaacggagttttcacgctccctgagtgc
tgtcctgtatgcggaacaaagcttgtgaagtccgaggaagaagcggcggtaaggtgtccg
aacgttgaatgtcctgcgcagatattcagaagcattgttcactttgcttcaaagggcgca
atgaacattgacggtcttggtccgcagatagttcacacccttcttgacaacaagcttatc
acctctgtggctgacctttacactctgagcgaaaacaagcttttacagcttgacaacttc
aaggaaaaatcagtgaacaatctgcttagtgctatagaaaagtcaaagtccaattctttg
gacagattggtgtttggtctgggcataagaaatatcggacaggcttctgcgaagcttctg
tgcgacaagttcggcgaccttgacaatatcatgaacgcttccgcagagcagatatccgag
atagacggctttggcggcgtaatggcgcaaagcgtttacaatgctttccatgaagagcat
atgatagagcttattcaaaggctcaaagaatgtgggataaacacaaagtatgagaaaata
cagatagacgaccgctttgcaggaaagacttttgttctcacaggcactttgccgacgctt
aaaagaagtgaggcaaaggcacttattgaaaaatacggcggcaaggcaagcggctcagtg
tccaaaaaaacggactatgttcttgcaggtgaggaagcaggaagcaagcttgataaagcg
cagcagctcggtatcgaaataatcaccgaagaacagttcaaggatatgataaaataa
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integrated database retrieval system
