Ruegeria sp. THAF33: FIU92_07355
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Entry
FIU92_07355 CDS
T06269
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rut
Ruegeria sp. THAF33
Pathway
rut03030
DNA replication
rut03410
Base excision repair
rut03420
Nucleotide excision repair
rut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU92_07355 (ligA)
03410 Base excision repair
FIU92_07355 (ligA)
03420 Nucleotide excision repair
FIU92_07355 (ligA)
03430 Mismatch repair
FIU92_07355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rut03032
]
FIU92_07355 (ligA)
03400 DNA repair and recombination proteins [BR:
rut03400
]
FIU92_07355 (ligA)
Enzymes [BR:
rut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIU92_07355 (ligA)
DNA replication proteins [BR:
rut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIU92_07355 (ligA)
DNA repair and recombination proteins [BR:
rut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIU92_07355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU92_07355 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIU92_07355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIU92_07355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
QFT72840
LinkDB
All DBs
Position
1451810..1454062
Genome browser
AA seq
750 aa
AA seq
DB search
MSNLISISELTEDEARAELARLAELLSKANTLYHTADAPDMSDADYDALKRRNAEIEARF
PHLKRPDSPTDQVGAKPADGFSKVTHAVRMMSLGNAFDDDDVADFDRSIRKYLGIGAGES
LAYTAEPKIDGLSLSLRYENGRLVQAATRGDGEVGESVTANARTVSDIPQHLKNAPEVLE
VRGEVYMSHADFEALNARQAERGGKPFANPRNAAAGSLRQLDPEITRARPLRFFAYAWGE
VSEPLSDSQMGAIERLKSLGFSTNPLTRLCKTTQEMLEHYRDIEAQRSTLGYDIDGVVYK
VNDLSLQARLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYIAGRDAKGGAIRDGKDIRVGDWVQVYRAGDVIPKLSDVDLSKRPAGS
QPFIFPTRCPECQSEAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDIEGLGAKQI
EMFYDDPILPIKTPADIFTLEQRDRANLARLKNRDGWGETSARNLFAAIDEKRTIPFARL
LFALGIRHVGEVGARDLALFYRDWETMTQALDTARPAALAQRQADEAEDAERAAALAEGR
RARVKEVRDAAITAARVPPDANAAWAELIGIDGIGATLGLSLSDAFSNVEERRAFNTLRK
ELTIVAPDAPASDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDILVAG
PGAGSKARKAAELGIETLDEDGWLQLIEGA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacttaatttccatatccgagctgacggaagatgaggcgcgtgccgagcttgca
cgtctggccgaactattgtcgaaagcaaacacgctgtatcacacggctgatgcgcctgac
atgtcggatgccgactatgacgctctcaaacggcgcaatgccgagatagaagcgcgcttc
cctcatctcaagcgtcccgacagcccgacggatcaagtgggtgcaaagcctgctgatggt
ttttcgaaagtcacgcacgccgtgcgcatgatgtcgctgggcaacgctttcgatgatgac
gacgtggccgatttcgacaggtcgatccggaaatacctgggcattggggctggtgaaagt
ctggcctacaccgccgaacccaagattgatggcctgtcgctgtcattgcggtatgaaaac
ggacggcttgttcaggctgccacgcgcggagatggtgaagtcggtgaaagcgtaactgcc
aacgcccgcacggtatccgatatcccgcagcacctgaaaaacgcgcccgaggttctggaa
gtcaggggtgaggtttacatgtctcacgcggatttcgaggcgttgaacgcgcggcaggca
gagcgcggcggaaaaccctttgccaatccaagaaacgcggcggcggggtctttgcggcaa
ctggatccggaaatcacgcgcgcgcgcccgttgcgtttctttgcttacgcctggggagag
gtttcagagccattgtctgactcgcagatgggggcgatcgagcggttgaaatcacttgga
ttttcgacgaatcccctgacccgcttgtgcaaaacgacgcaagagatgctggagcattac
cgggatatcgaagcgcaacgttccaccttgggctatgacatcgacggggtcgtctacaag
gtgaatgatctgtcgcttcaggcgcgtttggggttccgctcaaccacgccgcgatgggcg
attgctcacaagttcccggccgaactggcctggacgaggctggaagcgatcgacattcag
gtcggtcgtacaggcgcgcttagcccggttgcacggttgcatccggtgacggtgggcggt
gttgttgtgtccaacgccaccttgcacaacgaagactatatcgcggggcgcgatgccaag
ggcggcgcgatccgcgatggcaaggatattcgtgtcggtgactgggttcaggtataccgc
gccggggatgtgattccgaaactgtcagatgttgatctgtccaagcgcccggccggttcg
cagccctttatctttccgacgcgctgtccggaatgtcaaagcgaggcgatccgtgaagaa
ggtgatgcggtccgtcgctgcaccggtggtttgatttgccccgcgcaggccgttgaaaag
ctgaaacatttcgtctcgcgcaaggcgtttgacatagaaggccttggcgcgaaacagatc
gagatgttctatgatgatccgatccttccgataaagactccggcggatatctttacattg
gaacagcgtgacagggccaatctggcacggctgaaaaaccgggatgggtggggggaaacc
tcggccagaaatctgtttgccgcgatcgacgaaaagcggactattccatttgcgcgcctg
ttgttcgctttgggcattcgacatgtcggcgaggtcggagcgcgcgatctggcgctgttt
taccgcgattgggagaccatgacgcaggccctggacaccgcccgcccggcagctctggct
cagcggcaagcggatgaggccgaggatgccgaacgggcggccgcgctggcagaaggtcgt
cgggcacgtgtcaaggaagtgcgggatgcggccataaccgcggcgcgcgttccgccggat
gccaatgccgcctgggctgaattgatcggaatagacgggatcggcgcaacgctgggtctg
tccctgtccgatgcgttttcgaacgtggaagagaggcgcgcgttcaatacgttgcgcaag
gaactgacaatcgtcgcacctgatgcgcccgcctcagacagcccggtggctggcaagacg
gtcgtgttcaccggcactctggaaaagatgacccgcgccgaggcaaaggcacgggccgag
gcgttgggtgcgaaggtttccggttccgtcagcaagaaaacagatattctggtcgccggg
cccggtgcgggttcgaaagccaggaaagcggcagagctgggtatcgaaaccctggatgag
gatggctggttgcagctgatcgaaggcgcatga
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