Rhodomicrobium vannielii: Rvan_2105
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Entry
Rvan_2105 CDS
T01353
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03030
DNA replication
rva03410
Base excision repair
rva03420
Nucleotide excision repair
rva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rvan_2105
03410 Base excision repair
Rvan_2105
03420 Nucleotide excision repair
Rvan_2105
03430 Mismatch repair
Rvan_2105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rva03032
]
Rvan_2105
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_2105
Enzymes [BR:
rva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rvan_2105
DNA replication proteins [BR:
rva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rvan_2105
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rvan_2105
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rvan_2105
MMR (mismatch excision repair)
DNA ligase
Rvan_2105
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rvan_2105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ADP71330
UniProt:
E3I229
LinkDB
All DBs
Position
complement(2293263..2295596)
Genome browser
AA seq
777 aa
AA seq
DB search
MSPKAAGAKPAKTRRSRKTEGANAEQPLLAPAPDAEIAAPPTQDEAAFRDEALKHAEHLS
AEDAKDEHDALAAEIARHDLLYQDAAPEISDAEYDRLRLRLNALEAAFPSLITPESPSQT
VGATPSEKFAKVRHTVRMLSLGNVFSDEDVADFAGRVRRFLKFAPDEALDVTAEMKIDGL
SVSLRYENGRLAVAATRGDGSEGEDVTANVRTIADIPQVIRANDVPAVFEVRGEVYMSHA
DFQALNERQVGKGGRMFANPRNAAAGSLRQLDPAITAARPLRFFAWGWGEVRGWGEASAL
PADTNFGVLQAIHGWGFPLPPVEICRSVEEMLAVYRAIEMKRASLGYDIDGVVYKVNRLD
LQERLGFISRTPRWATAHKFSAEKATTVLNGIDIQVGRTGALTPVAKLAPVTVGGVVVQN
ATLHNEDEIRRKDVRIGDTVIVQRAGDVIPQILGPVLEQRPADAVEFVFPTLCPVCGSHA
VRETHPKTGKVDAVRRCTGGLICAAQAVERLRHFVSRHAFDIEGLGEKNIQAFFDEGRIK
APADIFTMAARDGVDLPKLSEKEGWGAQSAANLFAAIEARRTISLERFIFALGIRHVGET
TAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLESASGEDKRSLHRAIILAKLNEIDG
IGDVVAQSIVDFFDEPHNREAVDALRRELTIEAYKPDQVSSLLAGATVVFTGKLERFTRD
EAKAQAERFGAKVAGSVSKATTYLVAGPGAGSKLKKAEDLGVKVMTEDEWLEMISSA
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcctaaggcggcgggtgcgaagcccgcgaagacgcgccgctcccgcaagaccgag
ggggcgaacgccgagcagcctttgctcgctcccgcgccggacgcggagattgcagcgccg
cccacgcaggatgaagccgccttccgcgacgaggcgctgaagcacgccgaacacctgtcg
gcggaagatgcgaaggacgagcacgacgcactcgcggccgagatcgcgcgccacgacctt
ctgtatcaggatgccgcgccggaaatctccgatgccgaatatgaccgcctgcgcctgcgt
ctcaacgcgctggaagcggcgttcccgtcgctgataacgccggaaagcccgtcgcagacc
gtcggcgcgacaccgtccgagaagttcgcgaaggtgcgccatacggtgcgcatgctgtcg
ctcggcaacgtcttctccgatgaggatgtcgccgatttcgcgggccgcgtgcgccgcttc
ctgaagttcgcgccggacgaggcgctcgatgtcaccgccgaaatgaagatcgacggcctt
tcggtgtcgctccgctacgaaaatgggcggctcgcggtggcggccacgcgcggcgatggc
tccgagggcgaggacgtgaccgcaaacgttcgcaccatcgccgacatcccgcaggtgatc
cgcgcgaacgacgtgcccgccgtgttcgaggtgcgcggcgaagtttacatgagccacgcc
gattttcaggcgctgaacgagcggcaggtcggcaagggcgggcgcatgttcgcgaacccg
agaaacgcggcggccggatcgctccgccagctcgatccggcgatcaccgccgcgcggccg
ctacgcttcttcgcttgggggtggggggaggttcggggctggggtgaggcaagcgcgctg
cctgccgacacgaacttcggtgtgcttcaggccatccacggctggggtttcccgctgccg
ccggtcgaaatctgccgctcggtcgaggagatgctcgcggtctatcgcgccatcgagatg
aagcgcgcctcgctcggctacgacatcgacggcgtggtgtacaaggtgaaccggctcgac
cttcaggagcgcctcggcttcatcagccgcacgccgcgctgggcgactgcgcataaattc
tccgccgagaaggcgacgacggtgctgaacggcatcgacattcaggtgggccgcactggc
gcgctgacccccgtggcgaagctcgcgcccgtgactgtcggcggcgtcgtcgtgcagaat
gccacgcttcacaacgaggacgagatccgccgcaaggatgtgcgcatcggcgacacggtg
atcgtgcagcgcgcgggcgacgtgatcccgcagatcctcggcccggtgctggagcagcgc
cccgccgacgccgtggagttcgtcttcccgacgctttgccccgtctgcggcagccacgcg
gtccgcgagacacaccctaagaccggcaaggtcgacgcggtgcgccgctgtacgggcggc
ctcatctgcgccgcgcaggccgtggagcggctccggcatttcgtgtcgcgccatgccttc
gacatcgaagggctgggcgagaagaacatccaggcgtttttcgacgaggggcgcatcaag
gcgccagccgacatcttcaccatggccgcgcgcgacggcgtggacctgccgaagctcagc
gaaaaggaaggctggggcgcgcaatcggcggcaaacctgttcgcggctatagaggcgcgg
cgcacgatttcgctcgaacgcttcatcttcgcgctcggcatccgccacgtgggcgagacg
acggcgaagctgctcgcgaagactttcggctcgctcgacgcgctgcgcgccgccatggcc
gagccggacgcggccgaacttcggccgggagatgagcttctgcttgaaagcgcgtccggc
gaggacaaaagatcgctgcacagagccatcattctggcgaaactgaatgagatcgacggg
atcggcgacgtcgtcgcgcagtccatcgtggatttcttcgacgagccccataaccgcgag
gcggtggatgcgctgcggcgcgaactcaccatcgaggcgtacaagccggatcaggtttcg
tcgctgctggcgggcgcgactgttgttttcaccggcaagctcgaacgcttcacgcgcgat
gaggccaaggcgcaggccgagcggttcggcgcgaaggtggcggggtcggtgtcaaaggcg
acgacttacctcgtcgcgggtccgggcgcgggctcgaaactgaaaaaggcggaagacctc
ggggtgaaagttatgaccgaggacgagtggctggagatgatctcctccgcataa
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