Rhododendron vialii: 131319920
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Entry
131319920 CDS
T09330
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
131319920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131319920
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
131319920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
131319920
NCBI-ProteinID:
XP_058206347
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Position
3a:31126283..31142861
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AA seq
905 aa
AA seq
DB search
MGIPSFYRWLIERYPLAVTDVIEDPPTVVDGVSVPLDCSRPNPNGLEFDNLYLDMNGIIH
PCFHPEGLPAPETYDEVFDAVFKYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRTRRFR
AAKDAADEAAKIESERGVQESEGQDLERTTKLDSNVITPGTEFMSLLSSALQYYIHLRMN
MDPGWRDIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDANTTHCLYGLDADLIMLALAT
HEIHFSILREDVRKAYTKDRWSTDKRQKKKGENEQEEAVVKNIEEYITSLYYQFLHVWVL
RDYLVHDLSIPDPTVMTDLERLIDDFVFMCIFVGNDFLPHIPSLEIFEGAIDLLMVVYKE
EFAHMGGYLTNSFEVNLGRVEHFVKAVSSHENAILRKRSQVQREQKIRFGDSSSCPGVKK
VQSSTNHVTDVGNPVIDQVKLGEEGWKERYYAEKFEANTNDDREKIRGHSVLKYIEGICW
VMHYYYQGVCSWQWFYPYHYAPFASDFCGLDQLGIHFVLGKPFKPFDQLMGVLPAASAHA
LPFFYRKLMTDSSSPILDFYPEDFELDMNGKRFLWQAICKLPFIKESRLLLEIGKVEHTL
TEEEKRRNSLGLDILCIHKSHPLSTKIFSFWERNKDNPKVSKGKVKRKINAEVSGGMNGY
IYISDEPVCPSEINPPTDAMVMITDNKVISVFYKFPCFHPHIPKPPEGVNMPVKFVRKQD
VLPPPVLWHDRRSVRGRIYSERPIPNSISGRRLEKLAHRLVCKYYLAKEPGSQGSMEVGS
DIVVDAMACQPNLKVTVSRKEQDAGGEHFIVVERTNKKRKRGGDSQKSASIGVDDLASQS
NVKAAVSGKELDAGTGNCIVVEQVKKKRKQDSVSRKNRNKRWRINQAKRQQALANGIAPL
EPALI
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggggataccctcattctaccggtggctgatcgaacggtacccgctcgccgtcaccgac
gtcatcgaagatcctcccaccgtcgtcgacggcgtttccgttccattagattgtagtcga
ccgaaccctaacggccttgagttcgacaatctttacctcgacatgaacggaatcattcac
ccctgtttccaccccgaaggcctgcctgcgcctgagacgtacgatgaggtattcgatgcg
gtgttcaagtacatagatagaattttctcgatagtaagacctcggaaacttctttatatg
gcaattgatggtgttgcaccccgtgctaagatgaatcaacaacggacaagacgtttcaga
gccgcaaaggatgcagctgatgaagccgctaaaatagagagtgaaagaggagttcaggaa
tcagaagggcaagacttggagcgaactacaaagctggattcaaatgttatcacacctgga
actgaattcatgtcattactgtcgtcagctcttcaatattacatacacttgaggatgaac
atggatcctgggtggagggatatcaaggtcattctttctgatgccaatgttcctggtgag
ggagagcataagataatgtcttacatccgcttacaaagaaatttgccaggatttgatgca
aacactacgcattgtttgtatggactggatgcagacttgatcatgcttgcattggctaca
catgaaatccatttctctattctgcgagaggatgtgcgcaaggcgtacacaaaggataga
tggtcaacagataagaggcagaaaaaaaagggggagaatgagcaagaggaggcggttgta
aagaacatagaagagtatatcacgagcctgtactatcagtttctccatgtctgggtactc
agggactatctagtgcacgatttgagtataccagatcctacagtaatgacagacttggaa
cgcttgattgatgattttgtgttcatgtgcatatttgttggaaacgactttcttccacac
ataccgtcgttggagatatttgagggggctattgatctactgatggttgtctacaaggag
gagtttgcccatatgggcggttatctaacaaattcttttgaggtgaatttggggcgtgtt
gagcactttgtgaaagctgttagttctcatgagaatgcaattttgaggaaacgtagtcag
gtccaaagagaacagaaaattcgttttggtgattcttctagttgtcccggtgttaagaag
gttcaaagctcaacaaaccatgtaactgatgttggaaatccggtaatcgaccaggttaag
ctaggagaagagggatggaaagagagatattatgctgagaagtttgaggctaatacgaat
gatgatcgtgagaaaattcgtggacattcggtcctgaagtacatcgaagggatttgttgg
gtcatgcattattactatcaaggagtatgctcttggcaatggttctatccctatcattac
gctccctttgcctcagatttctgtggtcttgatcagttggggattcacttcgtacttggg
aaacccttcaagccattcgatcagttaatgggtgtattgcctgctgcaagtgcacatgca
cttcctttcttctaccggaagttgatgacagattcgtcatctcctattttggacttctat
cctgaggactttgagctagatatgaacggaaaacgttttctttggcaggctatttgcaaa
ttgccatttattaaggagtcccgcctcctcttggaaattggaaaggtggagcacacgttg
acggaagaggaaaaacgaagaaacagtttgggcctggacatactctgtattcacaaatct
catcctttatcaacgaagatcttttctttttgggagcgcaataaagataatccgaaggtg
tctaagggtaaagtcaaacggaagatcaacgctgaagtgagtggtgggatgaatggatac
atatatatttcggatgaacccgtgtgtccttcggagatcaatccaccaactgatgccatg
gtgatgatcacggataacaaagtcatatctgtcttctataaatttccttgttttcaccct
cacatcccaaaaccaccggaaggagtaaatatgcctgtgaagtttgtcagaaagcaggat
gttctacctccacctgttctatggcatgataggcggagcgtacgtggacgaatatattct
gaaaggcccattcccaactctatctccggtcgtcgtcttgaaaaattggcacatcggctt
gtttgcaagtattatcttgcaaaggaaccaggaagccaaggatccatggaagttggcagt
gatatagttgtggatgccatggcgtgccagccgaacttgaaagttacagttagtaggaag
gaacaagatgcaggtggcgaacacttcattgttgttgaacggactaacaagaaacggaaa
cgaggcggcgactcacaaaaatctgcaagtattggtgtggatgatctagcttcccaatca
aacgtgaaagcagcagttagtgggaaggaactagatgcaggcactggaaactgcattgtt
gttgaacaggtaaaaaagaaacggaaacaagatagtgtctcacgcaaaaatagaaataaa
aggtggagaattaaccaggccaagcggcagcaggcacttgccaatggaatagctcctttg
gagcctgccttgatttga
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