Rhododendron vialii: 131321147
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Entry
131321147 CDS
T09330
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131321147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131321147
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131321147
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA
AAA_15
NACHT
ATP-synt_ab
AAA_23
AAA_18
AAA_25
SRP54
PduV-EutP
AAA_24
AAA_33
AAA_22
Zeta_toxin
AAA_5
AAA_30
Arf
Motif
Other DBs
NCBI-GeneID:
131321147
NCBI-ProteinID:
XP_058208139
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Position
1a:complement(45943307..45947997)
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AA seq
337 aa
AA seq
DB search
METRSEKVSLELYRGHSIEHDEHSLEFGCGNKTQRCDAYKVQRERERAGKMEEESSSGIR
VSGMQFAYDAQPPLFLDFSLSILPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDIVRVL
NGSAFHDTHLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGVDPVRREKLI
ELLDIDLLWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVDLDVVARLDLLDFFKEEC
EQRGATIVYATHIFDGLETWATDLAYIQDGKLKRTEKLSELGELKNSANLLSVVESWLRS
ETKQEKKKPANPSAIIQKSSPFDSSPFRSSRHMAYYR
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggagacacgttcagagaaggtgagcctcgaactctacagaggccattcaatcgaacac
gacgaacattcattggagttcggttgcgggaataaaactcagcgttgcgacgcatataaa
gtgcagagagagagagagagagccgggaaaatggaggaggagagttcgagcggtattcgg
gtgagtggtatgcaattcgcgtacgatgcccaacccccgcttttcctggacttcagtctc
agtatcttgcccggatctcgatgccttctcgtcggtgccaacggatccgggaaaaccact
ttgttgaagatcttggctgggaagcatatggttggcggaagagatattgttcgggtgctt
aatggttcagcttttcatgatacacacctagtttgtagtggtgacttatcctatctggga
ggatcttggagtaaaactgttggctctgctggagagataccacttcaaggagacttttct
gctgaacatatgatatttggagttgaaggggttgaccctgttcgacgagagaagctgatt
gaactgctcgatattgatctactgtggcgaatgcataaggtttctgatggtcagcggcgt
cgagtccaaatctgcatgggtcttctccatccttttcaggttcttttgctagacgaggtt
acagttgatctagatgttgttgccaggctagatttgctggacttctttaaggaagaatgt
gagcagagaggagctaccattgtgtatgcaacccatatttttgatggactggaaacgtgg
gcgacggatttggcctacatccaagatggcaaattaaagaggaccgaaaaattatccgag
cttggtgagttgaagaactctgctaatctactttcagtggttgagtcatggcttcgatct
gaaacaaagcaagagaaaaagaaacctgccaatccttcagctataatccagaaatcttcc
ccattcgattcgtctccttttaggtcatccaggcacatggcctattatcggtga
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