Rhododendron vialii: 131325828
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Entry
131325828 CDS
T09330
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131325828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131325828
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131325828
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
Arf
AAA_23
AAA
AAA_30
Zeta_toxin
nSTAND3
ORC-CDC6-like
AAA_28
AAA_7
Motif
Other DBs
NCBI-GeneID:
131325828
NCBI-ProteinID:
XP_058214281
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Position
5a:complement(25936775..25942868)
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AA seq
328 aa
AA seq
DB search
MAVKNSNPTVVITNLSFTYPGIDGHPPPGSTPLIDEFSLTLHSGDRCLLVGSNGAGKTTI
LKILGGKHMVEPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVSA
DKMIFGVSGIDPHRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT
VDLDVLARADLLKFLRKECEERGATIIYATHIFDGLESWPSHIVYVAHGNLQLAMPMDKV
KEISNMSLMRTVEQWLRKERDEERKRRKDRKAKGLPEFEKQVDGSRVAGGPVIAAVRATN
NGWAAGRLHSTIAGEENFVFSSNRVLRQ
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgaagaattccaatccaacggtcgtgatcaccaacctcagcttcacgtacccc
ggaatcgatggccatcccccgccgggctccacccctctcatcgacgagttctctctcact
ctccactccggcgaccgatgcctcctcgtcggatcaaatggcgcagggaaaacgacgata
ctgaagatactgggagggaagcacatggtggagcccagcatggttcgcgtgctggggcga
tcggcttttcacgacaccgccttgacgtcttctggagatctctgctatctcggaggggag
tggaggcgagatgttgcttttgctgggtttgaggttccaatacaaatggatgtttctgct
gataagatgattttcggagtctcagggattgatcctcatagaagagctgaactgatcaag
gtgttagatatcgatctatcatggagaatgcataaagtatctgatggtcagagaagacgt
gtgcagatctgtatgggtctgttaaagccattcaaggtacttcttcttgatgagattaca
gttgatctggacgtgcttgcgagggctgacctgctgaagtttcttagaaaggaatgtgaa
gagagaggtgctacaattatatatgccacccatatatttgatggtcttgagagttggcca
tcacatatcgtttatgtggctcatggaaatctgcaactagcaatgccgatggataaagtt
aaggagatcagcaacatgtcactaatgagaaccgtggagcaatggctgagaaaagagaga
gatgaggagaggaagagaaggaaagatagaaaggcaaagggtcttccagaatttgagaag
caagttgatggaagtcgcgtggctgggggtccagtcattgctgctgtacgcgcaacgaac
aatggttgggctgcaggaaggctgcactccaccattgccggtgaagagaattttgtattc
agctcgaacagagttctgagacaatga
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