KEGG   Rhododendron vialii: 131331837
Entry
131331837         CDS       T09330                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
rvl  Rhododendron vialii
Pathway
rvl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131331837
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rvl03021]
    131331837
Enzymes [BR:rvl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     131331837
Transcription machinery [BR:rvl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     131331837
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 131331837
NCBI-ProteinID: XP_058221758
LinkDB
Position
7a:11175549..11192282
AA seq 1467 aa
MDNPLGAEQQVPFGVLTGINFSVLNDTEAEKVSVLSIESANEVTDPRLGMPNPTSQCPTC
GAKDSRSCEGHFGVIKFPFTILHPYFIAETAQVLNRICPGCKSVKHIKVKGAVSKQSCRY
CNGSFRESYPKMIFKVSSDDVFGKTAIIVEVVEKVLRNSPNKSSGENLAADYWDIIPRDV
QLDESSMKPTKRVLSHAQVYHMLKDVDPQFIKESAIFKKNPLFLNCFLVTPNSHRVAEFG
QHVVFDDRTRILKKMVDFRGTANELSSRVLDGLKSTKIRAEKPSTPEYGSSGNSTSGLRH
IKELLLGKRSDHAFRMVIVGDPNIKLSEIGVPCHIAERLQISEHLNSWNWEKLNTCSNLR
ILERGEIYVRRKDQLVAVNNMGKLQIGDLVHRPLNDGDVVLINRPPSIHQHSFIALSVKV
LPVNSVLSINPLVCSPFRGDFDGDCIHGYVPQSIDSRAELQELVALDKQLINGQSGRNLL
SLGQDSLTAAHLVVEDGVLLSLRQMQQLQMFCPNQLQFPAIAKASFTKATSPDNFFWSGK
QLFSLLLPPDFDYVFPENDVHISKGELLSSSDMSNWLRDADGNLIHGLVKHCQEKSIDFL
HAAQNVLCEWLSMRGLSVSLSDLYLSSDSSSRKNMIGEVSYGLQEAERISHIKLLMVDSH
QDFLIGTEEGLDSVDFGAEHMCCEKQKSAALSRVFASAFKQVFWDIQNLVYQYASKENSL
LAMLKAGSKGNLLRLVQHSMCLGLQHSLVPLAFRLPHELSCAAWIDHKASASTDIPECSG
RYIPSATIGSSYLSGLNPLECFVHSVTARDISFSDNADLPGTLNRRLMFFMRDLYIGYDG
TVRNAYGNQLIQFSYGIDDTASSSKATDGSLRDSTYDRRAMGCQPVGSLAACAISEAAYS
ALDQPISALESSPLLNLKKVLECGVKKKSGDKTASLYLSKKLGRWTHGFEYAALEVQSHL
ERLLFSDIVSTSMIVFSEKACSRKHTCPWVCHFHISKEMTKRRRIKVQSIIDALDMNWKC
ASARSKTDLPKLQIKRVNCSVADMQKENSATFCIAVKVVKCSKNPAVEIDNIRDMVIPFL
LGTVVKGFLEFKKVDILWKDGPKMSRSHRSSSGELYLRVFMSENCERRRFWSAIKENCLE
IMEIIDWERSHPDDIHDLTLAFGIDVARKHFLITLMSAISDIGKPTLPEHLLLTADCLSA
TGEFVALNVKGLAEQRKRTSVSSPFMQACFANPADCLIKAAKKGVTDDLQGSVDALSWGK
TPSIGTGGTFDIIYSGKGQELSKPEDIYKLLGSHLSSREQNVKVNVPGEHDFIFDKCIPR
PLCTSGEIFLKGRKNLEISKLILRKFITLKDILRLSQALKYMLHNYPINRRLSEVDKSIA
MMALYFHPRRNEKMGTGAREIKIGYHSEHDKARCFTLVRTDGTVEDFSYHKCIHHALEEI
APQRAKPYQMKWLSGMFVLLSVFLFPM
NT seq 4404 nt   +upstreamnt  +downstreamnt
atggacaatccattgggggcggagcaacaagtgccatttggggtcctgactggcataaat
ttcagtgttttaaatgacacagaagctgagaaagtatcagttttgtcaattgaatcagca
aatgaggtgacagatccgaggttgggaatgccaaatccaacctctcaatgccccacctgc
ggtgccaaggactcaagaagttgtgaagggcactttggggtaatcaaattcccatttacg
atactccacccatatttcatagcggaaactgctcaagtcttgaatagaatttgccctgga
tgtaaatctgttaagcacatcaaggtcaagggggcagtttcaaagcaaagttgcagatat
tgcaatggaagtttcagagaaagctatcctaaaatgatatttaaagtttcctcagacgat
gtgtttggaaagactgctattatagtagaagtagtggagaaggtgctaaggaattctccg
aataaaagttctggggaaaatttagccgctgattactgggatataatacccagagatgta
caactggatgaaagttctatgaaaccgaccaaaagagttctttcgcatgcccaggtctac
catatgctaaaagatgttgatccacagttcattaaagagagtgctatttttaaaaagaat
ccactctttctcaactgtttccttgtaactcccaacagtcatcgcgtggccgaatttggg
cagcatgtggtctttgatgaccggacaaggattttaaaaaagatggttgattttagaggc
acagccaatgagttgagctcacgggttcttgacggcctaaaaagtaccaagatacgcgct
gaaaagccatccactcctgaatatggttcctcgggtaatagtacgtctggtttgaggcac
atcaaagaactacttctagggaagcgaagtgatcatgcctttcgcatggttatagtcggt
gatccgaatataaaactcagtgaaattggtgtgccatgtcatatagcagagaggttgcaa
atctctgagcatctgaactcgtggaactgggagaaactgaacacttgctctaatttacgg
attcttgaaaggggagaaatttacgtccgaagaaaagatcaacttgttgcagtaaacaat
atgggaaagcttcagattggagaccttgtgcacaggccgctgaatgacggagatgtagtg
ttaataaacaggccgccgtctattcaccagcactccttcattgctctgtcagtaaaggtg
cttccagtaaactcagttttgtcaattaatccactcgtctgttctccttttcgtggggat
ttcgatggggattgcatacatggttacgttcctcagtcgatagactccagagctgagctc
caagagcttgttgctttggacaagcagttgataaatggacagagtgggagaaatctcctt
tcgcttggtcaagatagtttaaccgcggctcatttggtcgtggaagatggggtgctcttg
agccttcgccaaatgcagcagctgcaaatgttctgtcctaatcaattgcaatttccagcc
attgcaaaagcatctttcacaaaagctacttcaccagacaactttttctggtctggaaag
caattgttcagcttgcttcttcctccagacttcgattatgtctttccggaaaatgatgtt
catattagtaagggtgagcttttatcttcctcagacatgtcaaattggctacgtgacgct
gatggaaaccttatacatggtcttgtaaaacattgtcaagaaaaatctatcgacttcctg
catgctgctcagaatgttctatgcgagtggttgtcaatgaggggcttaagcgtttcatta
tctgacctttacctctcctctgattcatcctcgcggaaaaatatgattggtgaagtctct
tatggtttgcaagaagcagagaggatctctcacatcaaactgttgatggtagattcccat
caggatttccttattggaaccgaagaaggtctggattctgtggactttggagcagagcac
atgtgttgtgagaaacagaaatcagctgcccttagtcgagtttttgcttctgcgtttaaa
caagtcttctgggacattcaaaacctagtataccaatatgcaagtaaggaaaattctttg
ttggccatgttgaaggcaggaagtaagggcaatttgttgaggttagtccagcacagcatg
tgtttgggtttgcagcattcattggttccgctagctttcagattgccacatgagctttct
tgtgctgcgtggatcgatcacaaggcatctgcttctaccgatattccagaatgttctggg
cgttacattccatccgccacgattggaagttcctacctctctggcttgaatcctctagaa
tgttttgttcattctgtaaccgctcgtgatatttcttttagcgataatgccgatcttcca
gggactttgaatcgaaggcttatgtttttcatgcgtgatttgtacattggatatgatgga
actgtgagaaatgcttatgggaatcaactcattcagttctcttatggtatcgatgacact
gccagttcaagtaaagctactgatggttctctccgtgatagcacttacgatcgtcgtgca
atgggctgccagcctgttggttctttggctgcttgtgccatttccgaggcagcttatagt
gctttagatcagcccattagtgctcttgaatcatctccattgctaaatctaaagaaagtc
cttgagtgtggtgtgaagaaaaagagcggtgataaaactgcatctctatatttgtccaag
aaactcgggagatggactcatggttttgagtatgcagccttagaagtccagtctcatttg
gagagactactcttttcggacattgtttctacttccatgatagtcttctccgagaaggct
tgtagccgtaaacatacatgtccatgggtatgccacttccatataagcaaggagatgaca
aagaggagaagaataaaagttcaatctattattgatgccctggacatgaattggaagtgt
gctagtgccagatctaaaactgatcttcctaaattgcaaataaaaagagtgaattgttct
gtagctgacatgcagaaagaaaacagtgctacattttgcattgccgtcaaagtagtcaaa
tgctccaagaacccggctgtagaaattgataatatccgagacatggtgattccattcctt
ctaggaaccgtcgtaaaagggttcctggaattcaaaaaggtggatatcttgtggaaagat
ggaccgaaaatgtcaagatctcatagaagttcttctggtgaactgtacttgagagttttt
atgtccgagaactgtgagagacgaagattctggagtgccattaaggagaactgtctcgaa
ataatggaaataatcgactgggaacgcagtcatccagatgatattcatgatttgactttg
gcctttggaatagatgttgcacggaaacattttctcatcacattgatgtctgcaatatct
gacattggcaagcctacacttcctgagcatttgcttcttactgcggattgtttatcagct
acaggagagtttgttgccttaaatgtaaaagggttggctgagcaaaggaaacgcacatct
gtctcttcgcccttcatgcaagcgtgctttgctaatccagctgattgcctcattaaagct
gctaagaaaggagttacagatgatcttcaggggagtgttgatgcattgtcatggggaaaa
actccttccattgggactggtggaacatttgatatcatatattctggaaaggggcaggaa
ctttctaaacctgaagatatctataaacttttgggtagccatctcagttctcgtgaacaa
aatgtgaaggtcaatgtaccaggtgaacatgatttcatcttcgacaagtgtatccctcgg
ccactttgcacatctggtgaaattttccttaaagggcgtaaaaatttggaaatatccaaa
ttgatcttgaggaagtttataacactgaaagacattttgaggttgtctcaagcattgaag
tatatgctgcacaattatcccatcaatcgtcggttgagtgaagtggacaaatctattgcg
atgatggctttatattttcaccctcgaaggaatgagaaaatgggaactggagctcgggaa
ataaagattggttatcactctgagcatgataaggcccgctgctttacgttggtgagaact
gatggaacagttgaagacttctcataccataagtgcattcatcatgctctggaggaaatt
gctcctcaaagagcaaaaccctaccagatgaaatggttaagtggtatgtttgtcctactt
tctgttttcttatttccgatgtaa

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