Rhododendron vialii: 131332375
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Entry
131332375 CDS
T09330
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
131332375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131332375
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
131332375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
V-ATPase_G
Motif
Other DBs
NCBI-GeneID:
131332375
NCBI-ProteinID:
XP_058222547
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All DBs
Position
7a:complement(31434989..31462540)
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AA seq
976 aa
AA seq
DB search
MGVPAFYRWLADRYPKSIADVVEEEPRQGPNGVLLPVDVSKPNPNGMEFDNLYLDMNGII
HPCFHPEGKPAPTTYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAAAEAEEERLRKEFELEGKNQTPTETSDSNVITPGTEFMAVLSVGLQYHIQSRL
NHNPAWWSTKVILSDSNVPGEGEHKIMSYIRLQRNLSGFNPNTRHCLYGLDADLIMLSLA
THEVHFSILREVITLPGQQEKCFLCGQVGHLAADCRGRPGGQDVDMNGKVVDNTPIHKKK
YQFLNIWVLREYLQYDLEIPNPPFEISFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMHVYRKEFVAMGGYLTDAGEVLLDRVEHFIQSVAFFEEQIFLKRARIQQAMDNNEGM
KLKTRKEASEEPPVPDKVKLGEPGYKERYYAEKFDASDPEKIDEIRKDTVSRYVEGLCWV
CRYYYQGVCSWLWFYPYHYAPFASDLKGLADLEITFFLGEPFKPFDQLMGTLPAASSSAL
PEEYRRLMTDPASPILEFYPPEFEIDMNGKRFAWQGIAKLPFIDEKKLLAETKKLEGTLK
EEERFRNSVMHDLLYVHTSHPLAAKVTAYYRFFYQSAPHQRYPWPIDTNFSGEMNGYLWL
TVRNGYMNVVPSPVSGLQDVCHNQTLNVTYLNPPPHKHIPEHPKGTLLPGKNLGPLDIKP
FPGLWHEDNGGRRQQSRERPRVPGAMSIPQLGEAAHRLLKNTLNLKSNHNNFGSGEQTSY
RNAASNQVHNRPRGTGSSGYGRRFIEDRNSYCGNYDKGNGIAGSPRPAFSPFELKASQQS
LRTQDRYLNQEQQTVSPYVVQGNTQKFRRQDGYLHQEEQRHSLQDGMSALTIEEISTKPP
ALMSPRIPNSGQFPSNQNQFVQNIGPLPSPPPKWIIRRPAGNSGTCYKQQTSSAATHDKQ
VKNVCQAKSQEPPEFL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggctttctacaggtggctcgccgatcggtacccaaagtccatcgccgac
gtggtcgaggaggagcccagacaaggccccaacggcgtcctcttacccgttgacgtctcc
aaaccaaaccctaacggcatggagttcgataacctctacctcgacatgaacgggattatc
catccctgttttcatcccgaaggcaagcctgcacctaccacttacgatgacgtatttaaa
tcaatatttgattacattgatcatctattttcactggtccgcccaagaaagcttctttac
atggcaattgatggggttgccccaagagctaaaatgaatcagcaacgttccaggcgcttc
agagcagcaaaagatgcggctgcggctgaagcggaggaggaacgattgaggaaggagttt
gaacttgagggcaaaaatcagactcccacagaaacatctgactcaaatgtcataactcct
ggcactgagttcatggcagtgctctcagtaggacttcaataccatatacagtctaggttg
aaccataaccctgcctggtggagtacaaaggttatactctctgattcgaatgttcctggt
gagggtgaacacaaaatcatgtcttacatacggctgcagcgtaacctttcaggttttaat
ccgaatactcggcattgtttgtatggcctggatgcagatctgattatgctgtctctagcg
acacatgaggttcacttctcaatattaagggaggtgataaccttgcctgggcagcaagaa
aaatgtttcctctgtggtcaagttggtcatctagctgctgactgtcgtggtaggccaggt
ggccaagatgtagatatgaatgggaaggtggtggataacacgccaattcacaaaaagaaa
tatcagttccttaatatatgggtgttgcgagaatacttgcaatatgatttggagatcccc
aaccctccatttgagattagctttgagcgattggtggatgactttgtgtttctctgtttt
tttgttggaaatgactttcttccacatatgccaacactggaaattcgtgagggtgctatt
aatctattgatgcatgtttatagaaaggagtttgttgctatgggtggttatcttactgat
gctggtgaggttttgctggatagagtggaacattttatccagtcagttgctttctttgag
gagcaaatctttttgaagcgggctcgtatacagcaggctatggataataacgaagggatg
aagcttaaaactagaaaagaggcttctgaagagccgccagtgcccgataaggtgaaatta
ggcgagcctggatataaggaaaggtattatgcggagaaatttgatgcatcagacccagaa
aaaattgatgaaattagaaaagatactgtttcgaggtatgtagaaggtttatgctgggtt
tgccggtattactaccaaggtgtctgctcgtggctatggttttacccatatcattatgct
ccatttgcttctgatctgaaaggtctagctgatttagaaataacatttttccttggagag
ccttttaagccctttgatcaactcatgggaaccctgccagctgcaagttctagtgctctt
cctgaagagtacaggagattgatgactgacccggcatcaccaatccttgaattctaccct
cctgaatttgagattgacatgaatggaaagcgctttgcatggcagggtattgctaaattg
ccatttattgacgagaagaaattgcttgctgaaacaaagaagctagagggcactttgaag
gaggaagaacgatttcggaatagtgtgatgcatgatttgctatatgtgcatacttctcat
cccttggctgccaaagttactgcatactaccgttttttttaccaatcagccccacaccaa
agatatccttggccaattgacacaaattttagtggggaaatgaatggatatctttggtta
actgtgaggaatgggtacatgaatgtggttccttctcctgttagtggtttgcaagatgtt
tgccataaccaaactttaaatgttacctatttgaatcctccaccccataaacatatccct
gaacatcctaaaggcacactcttgcctggaaagaatcttggtcctttggacataaaaccc
ttccctggattgtggcatgaagataatggtggccggcgccagcaaagcagagaaaggcca
cgtgtacccggggcaatgtctattcctcagttgggagaagcagcacatcgtctgctcaag
aacacattgaatctcaaatccaatcacaataattttggatcaggagaacaaacttcgtac
aggaatgctgctagcaatcaagtacataataggccacgagggactggatcctctgggtat
ggaaggaggttcattgaggacagaaattcctactgtggaaattatgacaaaggcaacgga
attgcaggttctcctagacctgcattttctccctttgaattgaaagcaagccaacagagt
ttaaggacacaagatagatacttaaatcaagagcagcagacggtctctccctatgtggtg
caaggcaacacacagaagtttagaagacaagatgggtacttgcatcaagaagagcagcgc
cacagcctacaggatggaatgtccgctttgacaattgaagaaatcagtacaaagccaccg
gcattgatgtccccaaggatacccaattcaggacagtttccaagtaatcagaaccagttt
gtgcagaacattggtccacttccatcaccacctcccaagtggatcattagacggcctgct
ggaaatagtggaacgtgttataaacaacaaacgtcatcagctgcaacacatgacaagcaa
gtgaagaatgtttgtcaggcgaagagccaggagccgccagaatttctttga
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