Ralstonia wenshanensis: KOL96_14545
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Entry
KOL96_14545 CDS
T08691
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rwe
Ralstonia wenshanensis
Pathway
rwe03030
DNA replication
rwe03410
Base excision repair
rwe03420
Nucleotide excision repair
rwe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KOL96_14545 (ligA)
03410 Base excision repair
KOL96_14545 (ligA)
03420 Nucleotide excision repair
KOL96_14545 (ligA)
03430 Mismatch repair
KOL96_14545 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rwe03032
]
KOL96_14545 (ligA)
03400 DNA repair and recombination proteins [BR:
rwe03400
]
KOL96_14545 (ligA)
Enzymes [BR:
rwe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KOL96_14545 (ligA)
DNA replication proteins [BR:
rwe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KOL96_14545 (ligA)
DNA repair and recombination proteins [BR:
rwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KOL96_14545 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KOL96_14545 (ligA)
MMR (mismatch excision repair)
DNA ligase
KOL96_14545 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KOL96_14545 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UGS92283
LinkDB
All DBs
Position
1407020..1409461
Genome browser
AA seq
813 aa
AA seq
DB search
MSKTAKPASGATPEARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEANHPE
LKTPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTANGARAFDASVRRELGLDDTDP
PVEYAAELKFDGLAINLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVGGHV
PDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEVVGWQGMPDTHSGMLDALQAFGFPVSTERAAVKGGDGLVTFHEAIGAKRDSLPFD
IDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVGVVLDRRPMDDVPGS
DLFSPQQRPKYPPFELPKTCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELDYVHGIADLYKLKLEDFLEMKRRADERDGATPETVAAGKIATK
WAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLALPD
VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLEPAELYATLGVPKL
TAARAKQLAVAAPTLARLASVESDQLAGMPADVSASLLEWLGSHDHRTQLEWLDALRDEL
LAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGEE
AGSKLAKAEELNVKVLDEAGMLALLKKPAGDQA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagactgcgaaacccgcgtccggcgccacgcccgaggcgcgggcagcgtggctg
cgcgccgagctgaaccgctacgcccacgagtactacgtgctcgaccagcccagcgtgccc
gacgctgaatatgaccggctctatcgcgagctggaagcgctggaagccaatcatcctgag
ctgaagacgccggactcgcccacgctgcgggtcggcggggctgtgttgcccgaatttgcg
gcggtcaggcatgtcattcccatgctgtcgatccgcaccgagaccgacaccaccgccaac
ggcgcgcgcgcattcgacgccagcgtacgccgcgaactgggcctcgatgacaccgatccg
cccgtcgaatatgccgctgagctgaagttcgatggtttggcgatcaacctgcgctacgag
cgcggttatctcgtgcaggccgccacgcgcggcgacggcaccaccggcgaagacgtcacg
cagaacatccgcacgatccgccagattccactcgggctgtcgcctgttggcggccatgtg
cccgacgtgctggaagtgcgcggcgaggtatacatgcgccgcgatgatttcgaaaagctc
aacgcccgccagcgcgagcgcggcgacaagacgttcgtcaatccgcgcaacaccgcggcc
ggcgccgtccgccagctcgatccgaaaatggcggccgagcgcccgctatctttcttcgcc
tatggcctgggcgaggtggtcggctggcagggcatgcccgacacgcattccggcatgctc
gacgcgttgcaggcgtttggttttccggtcagcacggagcgcgctgcggtcaagggcgga
gacgggctggtcacgttccatgaggctatcggcgccaagcgcgacagcttgccgttcgat
atcgacggcgtggtctacaaggtcaattcactcgcattgcagcgcgaactcggctttcgc
acgcgtgagccgcgctgggcagtcgcgcacaaatatccggcgcaggaagcgctgaccacc
gtcgaatcgattggcgtgcaggtcggccgcacgggcgctatcacaccggtggcgcggctt
gtgccggtgttcgttggcggcgtgacggtcaccaatgcgacgctgcacaacgaagacgaa
gtgcgccgcaaggatgtgcgcgttggcgataccgtgatcgtccggcgtgccggtgacgtg
atccccgaggtggtgggtgtggtgcttgatcgccgcccaatggatgacgtgccgggcagc
gatttgttcagtccgcagcagcggccgaagtacccgccgttcgaactgccgaagacgtgc
ccggtgtgcggttcgcacgtcgtgcgcgaagaaggggaggcagtggcccgctgctcaggc
gggctgttctgctcggcacagcgtaaagaggcgatccgccactttgccggccgccgcatg
atggacatcgaaggcctgggcgagcgatacatcgacaacctggtcgagctggactacgta
cacggcatcgcggacctgtacaaactcaagctcgaagatttcctggaaatgaagcgccgc
gcagatgagcgcgatggcgcgacaccggaaaccgtcgctgccggcaagatcgccaccaag
tgggctgagaatctgctggaaggcatccaggccagcaagacgccgccgctggcgcgtttc
ctgtttgcgctcggcattcgccacgtgggcgaatcgaccgccaagacgctcgcggactgg
ctcggcagtctggccgtcattcggcgcgcgccggcgccgctgctgctggcgctgcccgac
gtgggtgccacggtggccgaagccatcgccgatttctttgccgagccgaagaatcagcag
gcgctcgatgcgctgctggaagccggtgttgcaccgcagggcgagcacgcgccaaacgcg
aagctgcgcgagaaactggagccagccgagctgtacgccacgcttggcgtgcccaagctg
acagccgcgcgtgccaagcaattggctgtggcagcgccaacgcttgcccggttggccagc
gtggagtccgatcagttggccgggatgccggcggatgtgtctgcatcgctgctcgaatgg
ctgggctcgcacgaccatcgcacgcagttggagtggctcgacgcactgcgcgacgaactg
cttgccgccatgccggctgaagccgccgaagaaggcgtgctggccggcaagactgtcgtg
ttgaccggcacattgccgaacctcacgcgcgatgaagccaaggccatgctggaagcggcg
ggcgccaaggtatcgggttcggtgtcgaagaagaccgactatgtggtcgccggagaagaa
gccggcagcaagctcgccaaagccgaagaattgaacgtgaaggttctggacgaagcgggt
atgctcgcgctgttaaaaaaaccggcgggagaccaggcatga
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