Rhagoletis zephyria (snowberry fruit fly): 108361997
Help
Entry
108361997 CDS
T08513
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108361997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rze03400
]
108361997
Enzymes [BR:
rze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108361997
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108361997
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT_2
DNA_ligase_A_C
BRCT
DNA_ligase_IV
Scm3
Motif
Other DBs
NCBI-GeneID:
108361997
NCBI-ProteinID:
XP_017470305
LinkDB
All DBs
Position
Unknown
AA seq
924 aa
AA seq
DB search
MDISKNIKFADICSMLDKVKNAKNQASKEKILRRYYESFQKFRQIFRKEQGVPPECPEEG
SSSFFSVLRCLIPRDDMSRKAYGLQITTLGNVYIDVLQLPKDSNDVQRLQARTYNGPQGD
YADIVYAVLMPRCRHEPSELSLYEVHQMLDTIAEDDRQDTKKVLTRLAEIASAQEQMWFI
RLLLKNMHLGIGEQRIFGLMHPQARDLNRRCSNLKRVCCLLADNKISTEYMSAQEAPGEQ
NRNVGTFNLNKIVQPFQHIQAMLCEIFRGSIEQLMAEDVLYLETKMDGERFQLHCANERF
KYISRNGIDYTHSFGENYKSGPLTPLLESLLPGDLQSIILDGEMMVYDMQQKCYRDKGEN
TDVKHLGNRKNWRPCFVVYDVLYFNGNSFLEMPYAQRCQKVVELIRGEEPGILQIMRPIK
ITEVEQFQQLFQKALDSKQEGVVLKKQNSTYKPGMRVGGGWYKIKADYIAGLTTEFDLLV
IGGFYNRTRTFIQSFLLGVLKYTSDTQYAVYSVGKVDNRTRQSKRLNDALKQHWQDSKME
PPPDWYHYKATSPEGRPDVWIEPSKSVILQIRATDLSPSSAFALAKSLHFPRIEMWRNDK
LWKESLSIHDYMEMIQGERGIKKIHKREVELGDLTGPQKKRKLTLAERRKLGILSYEKRF
NPDEIEQCSNLFEGFSFCILSASLKNGYTPEDLKAIVVSNGGEVVENPIQDPKCISVAGD
KTFRVETLCKSRRYNIAKLKWLVDTCKRQELQLTPTDMVCITHELEAEFSQIFDKYGDPF
TECTDVEQLMKVLDGIQDEDLVTMDSSKSKIAKLETILYDDTTDFFSNCCGTFYSIDQNT
QLAKLIYQYLGGQCFDDLNDDNIQTIKYVFINSNLIDKTKLKAWILKRFKKRLGNLHVVN
IAWILHSHRAKRKLDVYEYMWKEF
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggatatatcgaaaaacataaaattcgcggatatctgctcaatgctcgataaagtgaaa
aatgctaaaaatcaagcttcaaaagaaaagatactgcgtcgctattatgagtcatttcaa
aagtttcgacaaatatttcgcaaagaacaaggagttccgcctgagtgtcccgaggagggt
agctccagttttttcagcgtgctaagatgcctgataccacgggacgacatgtcgcgaaaa
gcttatgggttgcaaataacaacgctcggtaacgtgtacatcgatgtgttgcaacttcca
aaggattccaatgatgtgcagcgcttacaagcgcgcacctataatggacctcaaggagac
tatgccgatatcgtctatgcagtgctgatgcctcgttgtagacatgaacctagtgaacta
tccctgtatgaagtgcatcaaatgttggacactattgcagaggacgatcgacaagacaca
aaaaaggtgctaactcgcttggctgaaatagcttcagctcaagagcaaatgtggtttata
cggcttttgttaaagaacatgcatctcggcatcggcgagcaacgtattttcgggctcatg
catccgcaagccagagatttgaatagacgttgctcaaatttgaaacgggtttgttgtttg
cttgcagacaataaaataagcaccgaatatatgtcagcgcaagaggctccaggcgagcag
aaccggaacgtcggtacttttaatctgaacaaaattgtacaaccttttcagcacatacaa
gcaatgctgtgtgaaatatttcgaggcagtattgaacaattaatggctgaggacgtactt
tatttagaaacaaaaatggatggcgaacgttttcagttgcactgtgctaacgaacggttc
aaatatatatcgcgcaatggaattgattacacccatagcttcggcgaaaattataagagc
ggaccactgactcctttacttgaatcgctcttaccgggagacttacaatccataatactc
gacggcgaaatgatggtttatgatatgcagcaaaaatgttatcgtgacaaaggggaaaat
acggatgtgaagcatttgggcaatagaaagaattggcgaccttgctttgtggtctacgat
gtgttatattttaatggcaatagttttctggagatgccatacgcgcagcgttgtcaaaag
gttgtcgagcttattcggggagaagagcctggcatattgcaaataatgcgaccaattaag
ataaccgaagtagagcagttccagcagctcttccagaaagctttggattcaaaacaggag
ggagtagttttgaagaagcaaaattccacctataaaccgggtatgcgggttggaggtggg
tggtacaaaataaaggcagattacattgcgggcctgacaaccgaattcgatttactcgtt
attggtggtttttacaatcgaacgcgtacatttatccaatcatttttgctaggcgttctc
aagtacacttcggatacccaatatgccgtatacagtgttggtaaagttgataacagaacg
cgtcagagtaaacgactaaatgatgcactaaaacaacattggcaagatagcaaaatggaa
ccgcctcccgattggtatcattataaagccacgagccccgaaggcagacctgatgtgtgg
attgaaccaagcaaatcggtaatattgcaaattagagcaaccgacttgtccccttcctca
gcctttgcactagctaagtctttgcattttccgcgcatagaaatgtggcgcaacgacaaa
ctgtggaaggagtctctttcaattcacgattatatggaaatgattcagggagaaaggggt
ataaaaaaaatacacaagcgagaagttgaactgggagatttaacaggaccccaaaagaaa
cgcaagttaacgttggccgagcgccgtaaattgggcatattatcctatgaaaagcgcttc
aatccagatgagatagagcaatgttcaaatctgtttgaaggattctcattttgcatactg
agcgcaagtttgaaaaacggctacacgccagaggatctaaaagctattgtagtcagcaat
ggcggtgaagtagtggagaatcctatacaggaccctaaatgcatatcagtagcgggtgat
aaaacatttcgagttgaaactttatgtaagtcgcgtcgttataatattgcaaaattgaaa
tggttagtggatacttgtaagagacaggaattgcaattaactccaaccgatatggtttgc
ataacacatgagttggaagctgaattttcacaaatatttgataaatatggcgatccattt
acggaatgtacagatgttgaacagttgatgaaagtgttagatggcatacaagatgaagat
cttgtaactatggattcttcaaaatcaaagattgctaaacttgaaacgattttgtacgac
gacactacggacttctttagcaattgttgtggtaccttttatagtatagatcagaataca
caattggcaaaattaatttaccagtatttgggtggccagtgtttcgacgatttaaatgac
gataacattcaaactattaaatatgttttcatcaactctaatttgattgataaaactaaa
ttgaaggcgtggattttaaagcgtttcaagaagcgcttaggaaatttgcatgttgtaaac
attgcttggatactacattcacatcgcgctaagaggaaactagatgtatacgaatatatg
tggaaggaattttag
DBGET
integrated database retrieval system
