Candidatus Saccharimonas aalborgensis: L336_0206
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Entry
L336_0206 CDS
T02673
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saal
Candidatus Saccharimonas aalborgensis
Pathway
saal03030
DNA replication
saal03410
Base excision repair
saal03420
Nucleotide excision repair
saal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L336_0206 (ligA)
03410 Base excision repair
L336_0206 (ligA)
03420 Nucleotide excision repair
L336_0206 (ligA)
03430 Mismatch repair
L336_0206 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saal03032
]
L336_0206 (ligA)
03400 DNA repair and recombination proteins [BR:
saal03400
]
L336_0206 (ligA)
Enzymes [BR:
saal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L336_0206 (ligA)
DNA replication proteins [BR:
saal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L336_0206 (ligA)
DNA repair and recombination proteins [BR:
saal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L336_0206 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L336_0206 (ligA)
MMR (mismatch excision repair)
DNA ligase
L336_0206 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L336_0206 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AGL61915
UniProt:
R4PUS7
LinkDB
All DBs
Position
complement(211657..213693)
Genome browser
AA seq
678 aa
AA seq
DB search
MTIQNQPKLAEARIRVEKLRELINDYRYHYHVLDESILSEAAADSLKHELSQLEDWYPEL
ITADSPTQRVAGTALDSFSKVTHQTPMISLADVFDRDEVIAWVARMKRVLPTVGDEFLCD
IKMDGLASALIYQDGVLVQAVTRGDSRVGEDVTANVRTINNVPLRLRANQKFAHFLRGRT
EIRGEIVMFKEDFEMLNRARERSGEPLYKNPRNLAAGTIRQLDPKLVAERPLNFVGYDII
RDDLADTPTIAFGYAMLMELGITTSKQTRVVRGVAEIMEYVRHLDKIRSGLPFNTDGAVI
KVNNRTEFARLGIVGKTPRAAIAYKFAAEETTTIVKDIVISIGRTGAATPVAVFDPVQIA
GTTVQHASLHNADEIARLDVRIGDTVVIYKAGDIIPQVQQVLVELRPNNVAPFEYERELA
RQYPELEFERQEGEVVYRAKGLTGPLILKRSLQHFASKGALDIETLGEKNVEALVDAELV
NDIADIYRLTYEQLLGLERFAAISAQKMINAIAASKKPPLERFVFGLGIRHVGVQTAIDL
VKQFKSLDALRYATINQLRSVDGVGDVVAESVAAWFADEDNELLLSKFEQYDVTPFYEEK
SGKLINMSFVVTGTLTSMGRDEAADLIRTLGGTFQTTVGKDTDYLVVGGKVGASKLKKAQ
SYGTKVIDETAFLALIDK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacgatacaaaaccagcctaagcttgctgaggcgcggattcgggtcgaaaaactgcgc
gagctaatcaatgattatcggtaccactatcacgttcttgatgagtcaattttgagtgaa
gcggcagccgatagcttgaagcacgagttgtctcaacttgaagattggtacccggagctt
attacagccgatagcccaacgcaacgtgtcgccgggacagcactcgattcattttcaaag
gtcactcaccagacaccaatgataagtctcgctgatgtgtttgaccgcgacgaagttatc
gcgtgggttgctcgtatgaaacgcgtcttacctacagtcggtgatgaatttctctgcgac
ataaaaatggatgggttggcttctgcgctgatataccaagacggagtattggtgcaggca
gtaacgcgaggtgatagtcgagttggcgaagacgtaacggcaaatgtccgtacgataaat
aatgtgccactacggctgagagcaaatcaaaagtttgctcattttttgagaggccgtacc
gagattcgtggcgaaatcgtcatgtttaaagaagattttgaaatgcttaatagagcgcgt
gaacgaagcggtgagccactttacaaaaatccacgcaacttggcagcaggtaccattcgg
caacttgatccaaagctagtcgccgaacgaccacttaatttcgtggggtatgacattatt
cgtgatgatttggctgacacgccaacaattgcatttggttacgcgatgctcatggagtta
gggataacaacaagtaaacagacaagagtggttcgcggcgtagcagaaatcatggagtat
gtacgccatctagataagattcgatcaggcctgccctttaacacagacggtgccgtcatt
aaggtcaataatcgtaccgagtttgcgagactgggtatagtgggtaaaacacctcgagca
gcaatcgcgtataagttcgcagccgaggagacaacaactattgtaaaggatatcgttatt
tcgattggtcgtactggcgcagcgacgcctgtggctgtctttgatcccgtacaaattgcc
ggcacaacggtacaacatgcgagtctgcacaatgccgacgagattgcacgactcgatgta
cgcattggagatacggtggtgatttataaggcaggagatattattccgcaggtacaacag
gtgctcgtggagcttcgtcccaataatgtagcgccctttgagtatgaacgtgagcttgct
aggcagtatcctgaattggagtttgagcgacaagaaggcgaggtagtctatcgggcaaaa
ggcttgacaggaccactgattctcaaacgatcgttgcaacattttgcaagtaagggcgca
cttgatatcgaaacgctgggtgaaaaaaatgtcgaagcgcttgtcgatgccgagcttgta
aacgacatcgcagacatctatcggttgacgtacgagcaactactgggactcgaacgattt
gcggctatttctgcacaaaaaatgattaacgcaattgctgcgtcaaaaaagccgccactt
gaacgcttcgtctttggccttggcatcaggcatgtcggcgtgcaaacggcgattgatttg
gtaaagcagtttaaatcactggatgcacttcgctatgctacgattaaccagctgcgctca
gttgatggcgtcggcgatgtggtagccgagagtgttgccgcatggtttgctgatgaagat
aacgaattactactttctaagtttgagcagtacgatgtcactcctttctacgaagaaaaa
tcaggaaagttgataaatatgtcatttgttgtgactggtacgcttacttcaatgggacgt
gacgaggcggctgatcttatacggacattaggcggcacctttcagacaacagtcggtaaa
gatacagattacctggttgtcggaggtaaggttggtgcaagtaaactgaaaaaggctcag
tcgtatggtacgaaggttattgatgaaacggcattcctcgcgctcattgataagtaa
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integrated database retrieval system
