Sphingomonas sp. AAP5: E2E30_00090
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Entry
E2E30_00090 CDS
T10507
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saap Sphingomonas sp. AAP5
Pathway
saap03030
DNA replication
saap03410
Base excision repair
saap03420
Nucleotide excision repair
saap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2E30_00090 (ligA)
03410 Base excision repair
E2E30_00090 (ligA)
03420 Nucleotide excision repair
E2E30_00090 (ligA)
03430 Mismatch repair
E2E30_00090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saap03032
]
E2E30_00090 (ligA)
03400 DNA repair and recombination proteins [BR:
saap03400
]
E2E30_00090 (ligA)
Enzymes [BR:
saap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E2E30_00090 (ligA)
DNA replication proteins [BR:
saap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E2E30_00090 (ligA)
DNA repair and recombination proteins [BR:
saap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E2E30_00090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2E30_00090 (ligA)
MMR (mismatch excision repair)
DNA ligase
E2E30_00090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E2E30_00090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QBM74323
UniProt:
A0A4P6X7H2
LinkDB
All DBs
Position
complement(17285..19420)
Genome browser
AA seq
711 aa
AA seq
DB search
MSAPLPATETEAAAELARLAEQIAYHNARYHTDDAPEISDAAFDALRARNTALEADFPQL
VRADSPALQVGAAPAAHLAKVAHARAMTSLDNAFTDDDVAEFVARVRRFLALPDDAPVEL
TTESKIDGLSCSLRYEHRRLVQALTRGDGQVGENVTANVAYIEDIPQTLPADAPDIFEVR
GEVYMSKADFAALNARLLTEAEGAGKDARQFANPRNAAAGSLRQKDASVTATRPLRFFAW
GWGETSALPGETQSANLAALRGWGFQVAKGFAHAATTDAALAVYRAIEHQRADLPFDIDG
VVYKLDRLDWQARLGTVGRTPRWAIAHKFPAERAETTLTAIDIQVGRTGALTPVARLAPV
TVGGVVVTNATLHNADEIERLGARVGDRVVLQRAGDVIPQIVEVLTRDEDRPAFAFPSEC
PECGSLAERGEGEVVVRCTGGLICPAQRVERLIHFVSRHAYDISGLGLVRIEEFFRDGLI
ASPADIFRLHEHRAQLVTRERMSELVVDKLLAAIDLRRQIGLDRFLFALGIRHVGEITAR
DLARRYVSYAAFAEMIARVLAVREATVPALGETEAKFVVRRGRVLADAIETAGIGPEVAD
ALIEFFAEPHNRDVVAALLREVTPTDVVHQTRESPVSGKTVVFTGSLETMSRDEAKAQAE
LLGARVAGSVSAKTDLVVAGPGAGSKLKKAADLKVTVIDEAGWAEIVAAAR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctcccctccccgccaccgaaaccgaagccgccgccgaactcgcgcggctggcg
gagcagatcgcctatcataacgcgcgctatcacaccgacgacgcgcccgagatcagcgac
gccgccttcgacgcgctgcgcgcgcgcaacactgcgctcgaggcggacttcccgcagctc
gtccgcgccgattcgccagcactccaggtcggcgccgcgcccgccgcgcatcttgccaag
gtcgcgcatgcgcgcgcgatgaccagcctcgacaatgccttcaccgatgacgacgtcgcc
gaattcgtcgcgcgcgtgcggcgcttcctcgcgctgcccgatgatgcccctgtcgaactg
accaccgagtcgaaaatcgatggtctgtcctgctcgctccgctacgaacatcgtcggctt
gtccaagccctaacccgcggcgacggccaagttggcgagaacgtgaccgcgaatgtcgcg
tacatcgaagacatcccacagacattgcccgctgacgctccagatattttcgaggtgcgt
ggtgaggtctatatgagcaaggccgattttgcagcgctcaacgcccgcctgcttaccgag
gccgaaggcgccggcaaggacgcacgccagttcgccaatccccgcaacgcagctgccgga
tcactgcgccagaaggacgcttcagttaccgcaacccggccgcttcgcttcttcgcttgg
ggctggggtgagaccagcgcgcttcccggcgagacgcaaagcgccaaccttgcggcactg
cggggctggggcttccaggtcgcaaaaggtttcgcgcatgccgcgacgaccgacgccgcg
ctcgccgtctatcgcgcgatcgagcaccagcgcgccgacctcccgttcgacatcgacggc
gttgtctacaagctcgaccggctcgattggcaggcgcggctcggcaccgtcgggcgcacg
ccgcgctgggccatcgcgcacaaattccccgccgagcgcgccgagaccacgctcaccgcc
atcgacatccaggtcggccgcaccggcgcgctgaccccggtcgcgcggctcgcgcccgtg
acggtcggcggggtcgtcgtcaccaatgccacgctgcacaatgccgacgagatcgagcgg
ctcggcgcgcgcgtcggcgaccgcgtcgtgctgcagcgcgcgggcgacgtcatcccgcag
atcgtcgaagtgctgacgcgcgatgaagaccgccccgccttcgccttcccgagcgaatgc
cccgaatgcggctcgctcgccgagcgtggcgagggcgaggtcgtggtgcgctgcaccggc
gggctgatctgcccggcgcagcgcgtcgagcggctgatccatttcgtctcgcgccacgcc
tatgacatcagcggcctcgggctggtgcgaatcgaggagttcttccgcgacgggctgatc
gcctcgcccgccgatatcttccggctccacgaacatcgcgcccagctggtgacgcgcgag
cggatgtccgaactcgtcgtcgacaaattgctcgcggcgatcgacctgcggcgccagatc
gggctcgaccgcttcctgttcgcgctcggcatccgccatgtcggcgagatcaccgcgcgg
gacctcgcgcgtcgctatgtcagctatgcggcgttcgccgagatgatcgcgcgcgtgctt
gcggtacgcgaggcgacggtgcccgcgctcggcgagaccgaggcgaagttcgtcgtgcgg
cgcggccgtgtgctcgccgatgcgatcgagaccgcggggatcggccccgaagtcgccgac
gcgctgatcgagttcttcgccgagccgcacaatcgcgacgtcgtcgcggcgctgctgcgc
gaagtgacgccgaccgacgtcgtccaccagacccgcgagtcgccggtcagcggcaagacc
gtggtgttcaccggcagcctcgagacgatgagtcgcgacgaggccaaggcgcaggccgaa
ctgctcggtgcgcgcgtggcgggatcggtctcggccaagaccgatcttgtcgtcgcgggg
cctggcgcaggatcgaaactgaaaaaggcggcggatctgaaagttacggtgatcgacgaa
gcaggttgggccgagatcgtcgccgccgcccgctaa
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