Saccharomonospora xinjiangensis: EYD13_04780
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Entry
EYD13_04780 CDS
T05928
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sacc
Saccharomonospora xinjiangensis
Pathway
sacc03030
DNA replication
sacc03410
Base excision repair
sacc03420
Nucleotide excision repair
sacc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EYD13_04780 (ligA)
03410 Base excision repair
EYD13_04780 (ligA)
03420 Nucleotide excision repair
EYD13_04780 (ligA)
03430 Mismatch repair
EYD13_04780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sacc03032
]
EYD13_04780 (ligA)
03400 DNA repair and recombination proteins [BR:
sacc03400
]
EYD13_04780 (ligA)
Enzymes [BR:
sacc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EYD13_04780 (ligA)
DNA replication proteins [BR:
sacc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EYD13_04780 (ligA)
DNA repair and recombination proteins [BR:
sacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EYD13_04780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EYD13_04780 (ligA)
MMR (mismatch excision repair)
DNA ligase
EYD13_04780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EYD13_04780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
HHH
Motif
Other DBs
NCBI-ProteinID:
QBQ59329
LinkDB
All DBs
Position
1001106..1003286
Genome browser
AA seq
726 aa
AA seq
DB search
MSTEDLAASDELAEARSVEGSAREAVGGADIEDIKDVPVEVRERHTALADEVRGHQFRYY
VLDAPTISDAEFDRMLRELESLEAEHPALVTPDSPTQQVGGMFSTEFNAYDHLERMLSLD
NAFDLDELTAWIERVEKEIGGGTRYLCELKVDGLAVNLLYEKGRLTRALTRGDGRTGEDV
TLNVRTLQDVPDMLTATAGFDVPDLVEVRGEVYFRVEEFADLNAQLVAAGRSPFANPRNA
AAGSLRQKDPKVTRTRPLRLICHGLGKRSGFDPVRQSEAYDALAAWGLPVSEYSKVINSP
EGLVEHIRYWGEHRHDASYEIDGVVIKVDDVALQRRLGATSRAPRWAIAYKYPPEEANTT
LLDIRVNVGRTGRVTPYAVMEPVKVAGSTVAMATLHNAEEVKRKGVLIGDRVVIRKAGDV
IPEVLGPVVDVRTGSEREFVMPTHCPECGTPLRYEKEGDVDIRCPNARSCPAQLRERLFH
LAGRGAFDIEVLGYEAAGALLQSGVITDEGDVFDLDEEKLSRVDLFVTKAGALSANGRRL
LDNLDSAKDRPLWKVLVGLSIRHVGPTAAQALAREFGSVDAIDAADEQRLADVDGVGPTI
AHAVREWFAIDWHREIVEKWRRAGVRMEAERDTSVPRHLEGLSIVVTGSLAEFSRDEAKE
AIMVRGGKAAGSVSKKTAFVVVGDAPGSKYDKAIQLKVPVLNEDGFRVLLDDGPEAALEV
AENPPD
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagcactgaggacctggcggcgagcgacgagctggccgaggcccgctcggtcgagggc
agcgcccgggaggccgtgggcggcgccgacatcgaggacatcaaggacgtgcccgtcgag
gtgcgggagcggcacaccgcgctggcggacgaggtccggggccaccagttccggtactac
gtgctggacgcgcccacgatctccgacgccgagttcgaccggatgttgcgcgagctggag
agccttgaggccgagcatcccgctctcgtcacgcccgactcgcccactcagcaggtcggc
ggcatgttctccacggagttcaacgcctacgaccacctcgaacgcatgctgagcctcgac
aacgcgttcgacctcgacgagctcacggcctggatcgagcgggtcgagaaggagatcggc
gggggcacccggtatctctgcgaactcaaggtggacggcctcgccgtcaacctcctgtac
gagaagggcaggctcacccgagcgctcaccaggggcgacggccggacaggggaagacgtc
acgctcaacgtccggacgttgcaggacgtgccggacatgctgacggccacggccgggttc
gacgtgcccgacctcgtcgaggtgcgcggcgaggtgtatttccgggtcgaggagttcgcc
gacctcaacgcccagctcgtggcggcgggcaggtcgccgttcgccaacccgcgcaacgcc
gccgccggttcgctgaggcagaaggaccccaaggtcacccgcacaaggccgcttcggctg
atctgccacggcctcggcaagcgctcggggttcgacccggtgcgccagtccgaggcgtac
gacgcgctggcggcgtgggggctgcccgtgtccgagtacagcaaggtgatcaactcgcca
gaggggctcgtcgagcacatccgctactggggagagcaccggcacgacgcctcctacgag
atcgacggcgtcgtcatcaaggtggacgacgtggcgctgcaacggaggctcggcgcgacg
tcgcgggctccccgctgggccatcgcctacaagtacccgcccgaagaagccaacacgacg
ctgctcgacatccgggtcaacgtcggccgcacggggagggtcacgccgtacgccgtcatg
gagccggtgaaggtcgccggttccacggtcgcgatggcgacactgcacaacgcggaggag
gtcaaacgcaagggcgtcctcatcggcgaccgcgtggtgatccgcaaggcaggcgacgtg
attcccgaagttctcggccccgtcgtggacgtgcgcaccgggtcggaacgcgagttcgtc
atgcccacccactgccccgagtgcggcaccccgctgcggtacgagaaggaaggcgacgtc
gatatccggtgcccgaacgcgcggtcgtgtcccgctcagctgcgggaacggctgttccac
ctcgcggggcggggtgcgttcgacatcgaggtgctcgggtacgaggccgcaggcgcgttg
ctccagtccggtgtgatcacggacgagggcgacgtgttcgatctcgacgaggagaagctg
tcgcgggtcgatctgttcgtcaccaaggccggagcgctgtcggccaacggcaggcggctg
ctcgacaatctcgactcggcgaaggaccgtccgttgtggaaggtgctggtcgggttgtcg
atccggcatgtggggccgacggcggcgcaggcgctcgcgcgcgagttcggatcggtcgat
gccatcgacgccgccgacgagcaacgcctcgccgacgttgacggcgtcggccccaccatc
gcgcacgccgtgcgggagtggttcgcgatcgactggcatcgcgagatcgtggagaagtgg
cgtcgtgccggggtgcgcatggaggccgagcgcgacacctccgtcccccgtcacctcgaa
ggtctgtcgatcgtggtcaccggctcgctcgccgagttctcccgcgacgaggcgaaggaa
gcgatcatggttcgcgggggcaaggccgcgggctctgtgtcgaagaagacagcgttcgtc
gtggtgggcgacgcaccgggctcgaagtacgacaaggcgattcaactcaaggtgcctgtg
ttgaacgaggacggcttccgcgtgctgctcgacgacggccccgaggccgcgctcgaggtg
gcggagaacccaccggactga
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integrated database retrieval system
