Allosaccharopolyspora coralli: GIY23_17750
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Entry
GIY23_17750 CDS
T06288
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03030
DNA replication
sace03410
Base excision repair
sace03420
Nucleotide excision repair
sace03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GIY23_17750 (ligA)
03410 Base excision repair
GIY23_17750 (ligA)
03420 Nucleotide excision repair
GIY23_17750 (ligA)
03430 Mismatch repair
GIY23_17750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sace03032
]
GIY23_17750 (ligA)
03400 DNA repair and recombination proteins [BR:
sace03400
]
GIY23_17750 (ligA)
Enzymes [BR:
sace01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GIY23_17750 (ligA)
DNA replication proteins [BR:
sace03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GIY23_17750 (ligA)
DNA repair and recombination proteins [BR:
sace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GIY23_17750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GIY23_17750 (ligA)
MMR (mismatch excision repair)
DNA ligase
GIY23_17750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GIY23_17750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QGK71116
UniProt:
A0A5Q3QCP2
LinkDB
All DBs
Position
complement(3810574..3812760)
Genome browser
AA seq
728 aa
AA seq
DB search
MTSDDRATTADAPEDTAATSEDARPADPAANTDAEGVEDVPGEVRERYGNLVEEVRGHQF
RYYVLDSPLITDGEFDELFVELQRVEDEHPALRTPDSPTQIVGGTFSTEFTAVDHLERML
SLDNAFDEDELRTWVDRVEREVGSAASYLCELKIDGLAINLLYRDGRLERALTRGDGRTG
EDVTLNVRTMHDVPDLLTGTDEYPVPALVEVRGEVFFRVSEFGELNAALVDAGKAPFANP
RNAAAGSLRQKDPRITRNRPLRLICHGLGRREGFEPARQSESYAALRAWGLPVSEHTRVL
SATDAIVEHVRYWGEHRDDAEHEIDGVVVKVDEVSLQRRLGATSRTPRWSIAYKYPPEQA
TTALLDIQVNVGRTGRVTPFAVMEPVKVAGSTVSMATLHNSDEVRRKGVFIGDRVVIRKA
GDVIPEVLGPVTDARDGSEREFVMPTECPECGSTLSRQKEGDVDIRCPNSRTCPAQLRER
LFHLAGRGAFDIEVLGYEAAAALLASGVLVDEGDVFDLDEQKLLKAPLFRTKAGALSANG
RKLLDNLESSKSKPLWRVLVALSIRHVGPTAAQALARELGSLERIEAAEEADLAAVDGVG
PTIATAVREWFTVDWHREVVRKWREAGVRMEDERDQSVPRHLEGLSIVVTGSLQVYSRDE
AKELIMARGGRAAGSVSKKTAFVVVGDAPGSKYDKAMQLKVPVLDEDGFTVLLDQGPEAA
AQRALPAE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagcgacgaccgagccaccaccgctgacgcgcccgaggacaccgccgcgacgtcg
gaggacgcccgtcccgccgatcccgccgcgaacaccgatgccgaaggcgtcgaggacgtt
cccggcgaggtgcgggaacgctacggcaacctcgtcgaggaagtgcgcggccaccagttc
cgctactacgtgctggactcgccgctgatcaccgacggcgagttcgacgagctgttcgtc
gaactgcagcgcgtggaggacgaacacccggcgctgcgcacgccggactcgccgacgcag
atcgtgggcggcacgttctccaccgagttcaccgccgtggatcacctggagcggatgctc
agcctcgacaacgccttcgacgaggacgagctacgcacctgggtggaccgggtggaacgg
gaggtgggctcggcggcgagctacctctgcgagctcaagatcgacggcctggcgatcaac
ctgctctaccgcgacggtcgcctcgaacgtgccctgacccgtggcgacggacgcaccggt
gaggacgtgacgctcaacgtccgcaccatgcacgacgtcccggacctgctcaccggcacc
gacgagtatccggtgcccgcgctggtcgaggttcgcggcgaggtgttcttccgggtgagc
gagttcggcgagctgaacgccgcgctggtcgacgcgggcaaggcgccgttcgccaacccg
cgcaacgcggcggcggggtcgctgcgccagaaggacccgcggatcacccggaaccgtccg
ctgcggctgatctgccacggtctcggcaggcgggagggtttcgaacccgcgcggcagtcc
gagtcgtacgccgcgttgcgggcgtggggcctgccggtctcggagcacacccgcgtgctg
tcggcgaccgacgcgatcgtggagcacgtgcggtactggggcgagcatcgcgacgacgct
gagcacgagatcgacggtgtcgtcgtcaaggtcgacgaggtctcgctgcaacgccgcctc
ggtgcgacctcgcgcactccgcgctggtcgatcgcctacaagtacccgccggaacaagcc
accaccgcgctgctcgacattcaggtcaacgtcggacgcaccggcagggtcacgccgttc
gcggtgatggagccggtgaaggtggcgggctcgacggtgtcgatggcgaccctgcacaac
tccgacgaggtgcgtcgaaagggcgtgttcatcggggaccgggtggtgatccgcaaggcg
ggtgacgtgattccagaggtgctcggtccggtcaccgacgcccgcgacggctccgagcgc
gagttcgtgatgccgaccgagtgcccggagtgcgggtcgacgttgtcccggcagaaggaa
ggcgacgtcgacatccgctgtccgaactcgcggacctgccccgcacagctgcgggagcgg
ctgttccacctcgccgggcgtggcgcgttcgacatcgaggtgctcggctacgaggctgcc
gcggcgctgttggcttcgggcgtgctcgtcgacgaaggcgacgtgttcgacctcgacgag
cagaagctgttgaaggcgccgttgttccgcaccaaggcgggagcgctctcggccaacggc
cggaagttgctggacaacctggagtcgtcgaagtcgaagccgctgtggcgggtgctggtg
gccctgtcgatccggcacgtgggtccgaccgctgcgcaggcgctggctcgcgaactcggc
tcactggaacggatcgaggcggccgaggaggctgatctcgccgccgtcgacggcgtcggt
ccgacgatcgcgacggcggtgcgggaatggttcactgtggactggcaccgcgaggtcgtg
cgcaagtggcgcgaggcaggcgtgcgcatggaggacgagcgcgaccagtccgtgccacga
catctcgaaggtctctccattgtggtcaccggctccttgcaggtttattcccgggacgag
gccaaggaactcatcatggccaggggtggtcgcgcggccggctcggtgtcgaagaagacc
gcgttcgtcgtcgtcggcgacgcgcccggttcgaagtacgacaaggcgatgcagctcaag
gtcccggtgctcgacgaggacgggttcacggtgttgctcgaccaaggccccgaggccgcc
gcgcagcgagcgttgcccgcggagtga
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