Shewanella acanthi: K0H61_06675
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Entry
K0H61_06675 CDS
T09152
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sach
Shewanella acanthi
Pathway
sach03030
DNA replication
sach03410
Base excision repair
sach03420
Nucleotide excision repair
sach03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0H61_06675 (ligA)
03410 Base excision repair
K0H61_06675 (ligA)
03420 Nucleotide excision repair
K0H61_06675 (ligA)
03430 Mismatch repair
K0H61_06675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sach03032
]
K0H61_06675 (ligA)
03400 DNA repair and recombination proteins [BR:
sach03400
]
K0H61_06675 (ligA)
Enzymes [BR:
sach01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0H61_06675 (ligA)
DNA replication proteins [BR:
sach03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0H61_06675 (ligA)
DNA repair and recombination proteins [BR:
sach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0H61_06675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0H61_06675 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0H61_06675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0H61_06675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
GvpK
Motif
Other DBs
NCBI-ProteinID:
QYJ80073
LinkDB
All DBs
Position
1493202..1495271
Genome browser
AA seq
689 aa
AA seq
DB search
MQDTQLDKRLSERLNQEITSDNVQPLIEMLSQSLNEHNIRYYVDDAPSITDAEYDRLMQK
LKQLETEFPQYVQADSPSQRVGGMALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDR
AGEVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDDY
PELVEVRGEAFMPKAAFEALNERARLKNEKLFVNPRNAAAGSLRQLDSKITASRSLSFYA
YALGVVEPTTHELGQTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSDLPF
EIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEDVDFQVGRTGAVTPVAR
LRPVFVGGVTVSNATLHNADEIERLGVMIGDTVIIRRAGDVIPQIVAIVPERRSEDARAI
AFPQHCPVCGSLVERIEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQL
IDKELVQSPADLFKLTASMMTMLDRMGMKSATNLALAIDAAKTTTLPRFLYALGIREVGE
ATAANLASHFGSLDALRVANIEQLMEVEDIGEVVAQHVAHFFAQPHNLEVIDALITAGVN
WPAIEAPNEDAQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEA
AGSKLAKAQELGIMVMGEDELLALLAANR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacactcaactcgataaacgcctttctgaacgccttaatcaagagattacctca
gacaatgtacagcctttgattgagatgctgagtcagtccctaaacgagcataacattcgt
tattatgtcgatgatgcgccaagcattaccgacgctgaatatgaccgtctgatgcaaaag
cttaagcagcttgagaccgagtttcctcaatacgtgcaggctgattcgccaagccaacgc
gtcggcggtatggcattagcgaagtttgagcaaatcacccatttaaaacccatgctcagt
ctggataacgccttcgatgaagcagattttaccgcgtttcacaaaagggtcagcgatagg
gcgggtgaggtgagtttttgctgtgagcccaaactcgatggcttagccgtgagtattttg
tatcgcaacggtgtccttgagcgcgcagcgacccgtggcgacggcactgtgggcgaagat
attaccgaaaacgttaaaaccattaaatcaatcccacttaagctgcgtggcgacgattac
cctgaactggttgaagtacgcggtgaggcttttatgccaaaggcggcttttgaggcgtta
aacgagcgtgcacgtttaaagaatgaaaagctttttgtaaatccgcgtaatgcggctgcg
ggcagtttacgccagcttgacagtaaaattactgcctcgcgctcgctgtcattttatgcc
tatgcattaggcgtggttgagccgacaacccatgaacttggccaaacccattatgagcag
ctgcagcagcttaaatcttggggtctacccgtcagtagcgaaatcaaagtttgcgatgag
ttaagccaagtgtttgcttattatcaggatattttaactagacgaagcgatctccccttc
gaaatcgatggggtagtgatgaaagtgaatgatattgcccagcagcaaaccttaggattt
gtggcgaaatcgccgcgctgggcgattgcctataaatttcccgctcaagaagagatgacg
ctactcgaggatgtcgactttcaagtcggccgcacgggtgccgtcaccccggttgctcgc
ttaaggccagtgtttgttggcggtgtgactgtatcgaacgcgacattgcataacgccgat
gaaatcgagcgattaggtgtcatgattggcgatactgtgattattcgccgcgccggcgat
gttatcccgcaaatcgtggcgatagtccctgagcgccgttctgaagatgcaagggccatt
gcctttccgcaacactgtcctgtttgcggcagtttagtagagcgaatcgaaggtgaggcg
gttgcccgttgtagtggcggccttttctgtgaggcgcagcgaaaagaagcgatcaaacat
tttgcttcccgtaaggcattagatatcgatggtatgggcgataaaatcgtcgagcagctt
atcgataaagagttggtgcaaagccctgcggatcttttcaagttaaccgcttctatgatg
acgatgcttgatcgaatgggaatgaagtcagcgacgaacctagcccttgccatcgacgcg
gctaagaccaccaccttgccacgtttcctctatgcccttggaatccgtgaggtgggagag
gctacggctgctaatctagccagtcactttggtagcttagatgcgctgcgagtggctaac
atcgagcagttaatggaggttgaagatattggtgaagttgtggcgcagcatgtggcgcat
tttttcgcccagccccacaacttagaggttatcgatgcgctgattacggcgggcgttaat
tggcctgcgattgaagcaccaaatgaagatgcgcagccattaaagggccaaacttgggta
ttaaccggtaccttaaaccagcttaatcgtaacgatgccaaggcgcagttacaggcctta
ggtgctaaagttgcgggtagcgtttccaaaaatactgactgtttagttgccggtgaagcc
gcgggttctaaacttgcgaaagcccaagaactgggcattatggtgatgggggaggatgag
ttattggccctgttagcggcaaaccgctaa
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