Singulisphaera acidiphila: Sinac_2587
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Entry
Sinac_2587 CDS
T02393
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saci
Singulisphaera acidiphila
Pathway
saci03030
DNA replication
saci03410
Base excision repair
saci03420
Nucleotide excision repair
saci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sinac_2587
03410 Base excision repair
Sinac_2587
03420 Nucleotide excision repair
Sinac_2587
03430 Mismatch repair
Sinac_2587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saci03032
]
Sinac_2587
03400 DNA repair and recombination proteins [BR:
saci03400
]
Sinac_2587
Enzymes [BR:
saci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sinac_2587
DNA replication proteins [BR:
saci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sinac_2587
DNA repair and recombination proteins [BR:
saci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sinac_2587
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sinac_2587
MMR (mismatch excision repair)
DNA ligase
Sinac_2587
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sinac_2587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
ABC_tran_CTD
Motif
Other DBs
NCBI-ProteinID:
AGA26889
UniProt:
L0DBZ5
LinkDB
All DBs
Position
complement(3206122..3208140)
Genome browser
AA seq
672 aa
AA seq
DB search
MASREIEREVAKLREEIEGHNRRYYQDAAPTISDREFDRLMKRLEELEAEAPELLTPESP
TQRVGGAPLASFQTVTHSVPMLSIENTYNYDEVREWDARIRKALNPGEPVRFAVELKVDG
VAVSLRYEQGRFVLGATRGDGERGDDVTANLRTVRDIPLALHDAPPPLLEVRGEVYMTNS
ELVRLNELRVAREEAPFANPRNSTAGSLKLLDPKLCGQRRLKFISHGLGEFEGIEVSSYA
EMQNLLRLWGIPVSPHNETFETIDQVIAHAEHWSSQRNTLDFQTDGLVIKVDDLGQRARL
GTRSKSPRWVIAFKYEAEQAVTKIVGITVQVGKTGKLTPVADLTPVALAGTTVKRASLHN
ADEILRKDVRVGDTVVIQKAGEIIPQVVRVETEARDGSEIPFVFPTRCPSCEGPVERSEG
EVDFHCANPPSRCPDQLKEWIRWFAHRDAMDIEGLGSKLIEQLVDRGLVQDLAGLYRLDE
ATLAGLERMGKKSAQNLVAALEESKRRPLNRFLTGLTIRHVGTRSAEILAQRFSTLEAVR
TAPLADLESVPEIGPVVAASVFEFFQDPENQRLLDALPSVGVQPEAVVYTPASRAGLPLA
GKTFVITGTLPNRTRPEAESLIKNQGGKVTGSVSKSTSYVVAGAEPGSKIEKARLLNIPV
IDESELERLAGG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcgggagatcgaacgcgaagtggcgaagctccgcgaggagatcgagggccac
aaccgtcgctattaccaagacgccgcgcccaccatcagcgatcgagaattcgaccgcttg
atgaagcggctcgaggaactcgaggccgaggcgcctgagctgctcacccccgagagcccc
actcaacgcgtcggcggagcaccgttggcgtcgttccagacggtaactcactccgtcccg
atgctctcgatcgagaacacgtacaattatgatgaggtccgcgaatgggatgcgcggatc
cgcaaagctttgaatccgggcgagcccgtccgcttcgccgtcgagctcaaagtcgacggt
gttgccgtctccctgcgctatgagcaaggccgtttcgttctgggggcaacccggggcgac
ggcgaacggggcgacgacgtgacggccaatctgcggacggtgcgcgacatcccgctcgcc
ctccacgacgccccccctcccctgctcgaggtccggggcgaggtctacatgaccaactcc
gagcttgtccggctcaacgagcttcgagtcgcccgagaggaggcaccgtttgccaacccg
cgcaactccaccgccggctcgctgaaactgctcgaccccaagctttgcggccaacgccgg
ctgaaattcatctctcatggtctcggcgagttcgaggggatcgaagtctcctcctatgct
gagatgcagaacctgctgcgcttgtggggcatacccgtgagtccgcacaatgagactttc
gagacgattgaccaggtgatcgctcacgctgagcactggtcgagccagcggaacaccctc
gacttccagaccgacggtctggtcatcaaggtggacgacctcgggcagcgagcgcggttg
gggacgcggagtaagagcccaaggtgggtcatcgccttcaagtatgaagccgagcaggcg
gtgaccaagatcgttgggattaccgttcaggtgggcaagaccggaaagctgactccggtg
gccgacctgactccggtggctctcgccggcacgaccgtgaagcgggcgagcctccacaac
gccgacgagatcctccgcaaggacgtccgggttggcgatacggtcgtgatccagaaggcg
ggagagatcatcccccaggtggttcgcgttgagacggaagcacgcgatggcagcgagatt
ccgtttgtctttcccacccgctgcccaagctgcgaaggccccgtcgagcggagcgaaggc
gaggtggacttccactgcgcgaatcccccctcacgttgtcctgaccaactcaaggagtgg
attcgctggttcgctcatcgtgacgcgatggatatcgaagggctagggagcaagctcatc
gagcagcttgtcgaccgtggcctcgtccaagacttggccggcctctaccgactcgatgaa
gccaccctggccggtctcgagcggatgggaaagaagtcggctcagaacctcgtcgccgct
ttggaggagagtaagcgccggccattgaatcggtttctgaccggcctgacgattcggcat
gtgggaacgcggagcgcagagatcctggcgcagaggttctcgactctcgaagccgttcgt
acggctcccctggccgatctcgagtcggtccccgagattggacccgtggtcgcggcgagt
gtcttcgagttcttccaagacccggagaaccaacgcttgctcgatgccttgccgtcggtc
ggtgtccagccggaagccgttgtgtatacgcctgcgagccgcgcagggcttcccctggcg
gggaaaacgttcgtgatcacggggactttgccgaaccgaactcggcccgaggccgagtcg
ttgatcaagaaccagggcggcaaggtcaccggctcggtttccaagtcgaccagctacgtg
gttgccggggccgagcctgggagcaagatcgagaaagcccgcctactgaatatccccgtg
atcgacgagtctgagctcgagcgtcttgcgggcggttaa
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integrated database retrieval system
