Streptococcus acidominimus: SAME_01640
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Entry
SAME_01640 CDS
T08039
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saco
Streptococcus acidominimus
Pathway
saco03030
DNA replication
saco03410
Base excision repair
saco03420
Nucleotide excision repair
saco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAME_01640 (ligA)
03410 Base excision repair
SAME_01640 (ligA)
03420 Nucleotide excision repair
SAME_01640 (ligA)
03430 Mismatch repair
SAME_01640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saco03032
]
SAME_01640 (ligA)
03400 DNA repair and recombination proteins [BR:
saco03400
]
SAME_01640 (ligA)
Enzymes [BR:
saco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAME_01640 (ligA)
DNA replication proteins [BR:
saco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAME_01640 (ligA)
DNA repair and recombination proteins [BR:
saco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAME_01640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAME_01640 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAME_01640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAME_01640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Relaxase_C
RNA_pol_A_CTD
RNA_lig_T4_1
Beta-prop_WDR35_TULP_N
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
SNV43093
UniProt:
A0A239XAA3
LinkDB
All DBs
Position
1:complement(1576346..1578292)
Genome browser
AA seq
648 aa
AA seq
DB search
MKELVDLLNQYAKEYYTQDQPSVSDAKYDKLYRELIDLENKYPEFILDNSPSHRVGGLIL
SGFEKYQHQYQLYSLQDAFSKEELETFDRRVKADFPDISYVAELKIDGLSISLSYEDGKL
ITGATRGDGTVGENITENLKRVKDIPLTLNQMQTITVRGEAYLPKASFAAINKERHDNGE
TEFANPRNAAAGTLRQLDTSIVSKRNLATFLYQEASPSQMDSQEAVLENLQSLGFSVNQE
RLVTSSIAEIWDFIQSIQNKRETLPYDIDGIVIKVNDLHVQDEIGFTVKAPKWAIAYKFP
AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIKEKDIRIGDWVT
VYKAGDIIPAVLAVNLDKRKDQPPMPIPTACPSCGSELVHLKEEVALRCINPLCPSLIQR
SLEHFASRNAMNIAGLGPSVVEKVFKADLVKDVADIYHLTVDDLLTLPNVKEKSANKLYE
AIQGSKANSADKLLFGLGIRHVGAKASRLMLEEFGSLKALATASQEAISTIDGLGSIIAD
SVASYFAKEEVGVLLDELEQAGVNLDYLGQKVAKDAQLSGLTVVLTGKLEQLTRNEAKAK
LESLGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIHVETEDWLQSL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattggttgatttgctcaaccagtacgctaaggagtactacactcaagaccaa
ccttcggtaagtgatgccaagtatgacaaactttaccgagaattgattgacttggaaaac
aaatacccagaattcattttagataatagccctagccatcgtgtaggtggtttgattttg
tctggatttgaaaaataccaacatcagtatcagctttatagtttgcaggacgctttttca
aaagaagagctagaaacttttgatcgtcgtgtcaaagcagactttcctgatatttcttat
gtagctgagctaaagattgatggcctctccatttcattgagctacgaggacggaaaactc
atcactggtgccacgcgtggagacggtactgttggcgaaaatatcactgaaaacctcaag
cgtgtcaaagacattcctttaactctaaatcaaatgcagaccataacggttcgtggcgaa
gcttaccttcctaaagcctccttcgcagctatcaataaagaaaggcatgataatggggaa
acagagtttgccaatcccagaaatgcagctgcgggcactctgcgtcagctggatactagt
atagtatcaaagcgtaacctagcgacctttttatatcaagaagctagtccgagtcaaatg
gatagccaagaagctgttttggagaacttgcaatctctaggcttttcagttaaccaggaa
cgtttagtgacatcgtcaatagctgaaatctgggactttatccaaagcattcagaacaaa
cgcgagacgcttccttatgacattgacgggattgtcatcaaggtcaatgatttgcatgtt
caagatgaaatcggctttaccgtcaaggcgcctaaatgggccatcgcttacaaatttcca
gcagaagaaaaagaagcccaactcttatcggtagattggacagtgggtcgtacaggagtc
gtgacacctacggctaacttgactccagtgcagctagcaggaacgactgttagtcgcgcc
acccttcataatgtagattacatcaaagaaaaggatattcgtatcggagactgggtcacg
gtttataaggctggcgatattattcctgcagttttagcagtcaacttggataaacgaaaa
gatcagccccctatgcctatcccgacagcttgcccctcatgtggtagtgagctggtccat
ctcaaggaagaagtggcccttcggtgtattaatcccttgtgtccaagtttgattcaacgc
agtttagagcactttgctagccgaaatgctatgaacatcgcaggcttaggtccatctgtg
gttgaaaaagtcttcaaagcagacttggtcaaagatgtggcagatatttatcacctgaca
gttgatgatctcttaaccttgccaaatgttaaagaaaaatcagccaacaaactttatgag
gctattcagggttctaaagcgaactcagctgacaaactcttgtttgggctaggtattcgt
catgttggtgccaaagccagccgattaatgttagaggaattcggtagtctcaaggctctg
gctacagcgagtcaagaagccatttcgaccattgacggcctaggtagtattatcgctgat
tctgtcgcttcttactttgccaaagaagaagttggcgtcttgcttgacgagttggaacaa
gctggggttaatcttgactatcttggtcaaaaagtagccaaagatgctcagttatctggt
ttgacggttgttttaacaggaaaacttgagcaacttacacgaaatgaggctaaagcgaaa
ctggaaagtcttggtgctaaggtgacaggatccgtttctaagaaaacagatctcgttgtt
gcaggatccgatgccggtagcaaacttgaaaaggctcagtctttgggtattcatgtggaa
acagaagactggctccaatcactttag
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