Saccharothrix sp. 6-C: IOD16_30035
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Entry
IOD16_30035 CDS
T09941
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sacx
Saccharothrix sp. 6-C
Pathway
sacx03030
DNA replication
sacx03410
Base excision repair
sacx03420
Nucleotide excision repair
sacx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sacx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IOD16_30035 (ligA)
03410 Base excision repair
IOD16_30035 (ligA)
03420 Nucleotide excision repair
IOD16_30035 (ligA)
03430 Mismatch repair
IOD16_30035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sacx03032
]
IOD16_30035 (ligA)
03400 DNA repair and recombination proteins [BR:
sacx03400
]
IOD16_30035 (ligA)
Enzymes [BR:
sacx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IOD16_30035 (ligA)
DNA replication proteins [BR:
sacx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IOD16_30035 (ligA)
DNA repair and recombination proteins [BR:
sacx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IOD16_30035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IOD16_30035 (ligA)
MMR (mismatch excision repair)
DNA ligase
IOD16_30035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IOD16_30035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Zn_ribbon_TFIIB
zf-IS66
5_3_exonuc
GvpD_bR2
Motif
Other DBs
NCBI-ProteinID:
QQQ80882
LinkDB
All DBs
Position
complement(7088428..7090620)
Genome browser
AA seq
730 aa
AA seq
DB search
MNPTQAPAEGVEDVPAPVRERHAALAEVVRGHQFRYYVLDSPTVSDGEFDALLRELEALE
QAHPGLATPDSPTQLVGGTFSTDFTAVDHLERMLSLDNVFSAEELRAWFERVRKEVGADA
HFLCELKIDGLAINLLYEHGRLVRALTRGDGRTGEDVTLNVRTLPDVPETLTGTDEHPVP
ALVEVRGEVFFAVEDFLELNARLVEAGKPPFANPRNTAAGSLRQKDPKITASRRLRLICH
GLGKRDGFDLTTQSQAYEALRAWGLPVSSHTKVLRTFEEVSEHVAHWGEHRHDAVHEIDG
VVIKVDEVSLQRRLGSTSRAPRWAIAFKYPPEEATTTLLDIKVQVGRTGRVTPFAVMEPV
KVAGSTVARATLHNAGEVKRKGVLIGDRIVIRKAGDVIPEVLGPVIDARPADARAFEMPL
TCPECGHALRPMKEADVDIRCPNAAGCPGQLRERLAYLASRSALDVEVLGFEAAAALVDS
PVYADEGDLFDLDADKLGQVELFRTKDGDLTANAVKLLDNLETVKQRPLWRVLVALSIRH
VGPTAARALAQEFGSLERIVAATEEELASAEGVGPTIATAVREWVETPWRQEIVRKWQAA
GVRTAEERDTSVPRNLAGLSIVVTGSLETFSRDEAKEAILSRGGKAAGSVSKKTAFVVVG
ESPGSKAEKAEQLKVPILDEAGFRVLLTNGPEAATAIATITETPTTPRNPHHRTTPPTLH
LTLTPPPPPP
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
ttgaacccgacccaggcccccgccgagggcgtcgaggacgtgcccgcccccgtgcgcgag
cggcacgccgcgctggccgaggtggtgcgcgggcaccagttccgctactacgtcctcgac
tcgccgacggtcagtgacggcgagttcgacgcgctgctgcgcgagctggaggcgctggag
caggcgcaccccggcctcgccacacccgactcgcccacgcagctcgtcggcggcaccttc
tcgaccgacttcaccgcggtcgaccacctggagcggatgctcagcctcgacaacgtgttc
tccgccgaggagctgcgagcctggttcgagcgcgtgcgcaaggaggtcggcgcggacgcg
cacttcctgtgcgagctgaagatcgacgggttggcgatcaacctcctctacgagcacggc
cgcctggtccgcgccctgacccgcggcgacgggcggaccggcgaggacgtcacgctcaac
gtccgcacgctgcccgacgtgccggagacgctgaccggcaccgacgagcacccagtgccc
gccctggtcgaggtgcgcggcgaggtgttcttcgccgtggaggacttcctggagctcaac
gcgcggctcgtcgaagcgggcaaaccgcccttcgcgaacccgcgcaacaccgccgccggg
tcgctgcgccagaaagaccccaagatcaccgcgtcccgccggctgcggctgatctgccac
ggcctcggcaagcgcgacggcttcgacctcaccacccagtcccaggcctacgaggcgctg
cgggcgtggggcctgcccgtgtcctcgcacaccaaggtcctgcgcacgttcgaagaggtc
tccgagcacgtcgcccactggggcgagcaccgccacgacgccgtgcacgagatcgacggc
gtcgtcatcaaggtcgacgaggtctcgctgcaacgccgcctgggcagcacctcccgcgcg
ccgaggtgggcgatcgccttcaagtacccgcccgaggaagcgaccaccaccctcctcgac
atcaaggtgcaggtcggtcgcaccggccgcgtcacaccgttcgccgtgatggaaccggtg
aaggtcgccgggtccaccgtcgcgcgggccaccctgcacaacgccggcgaggtcaagcgc
aagggcgtgctcatcggcgaccgcatcgtgatccgcaaggccggcgacgtgatccccgag
gtgctgggcccggtgatcgacgcccgcccggccgacgcccgcgccttcgagatgccgctg
acgtgccccgagtgcggccacgcgctgcgcccgatgaaggaggcggacgtcgacatccgc
tgccccaacgcggcggggtgcccgggtcagctgcgggaacggctcgcgtacctggcgtca
cgttcggcgctggacgtcgaggtgctgggcttcgaggcggcggcggccctggtcgactcc
ccggtctacgccgacgagggcgacctgttcgacctggacgcggacaaactgggacaggtc
gagctgttccgcaccaaggacggcgacctgaccgcgaacgcggtgaagctgctggacaac
ctggaaacggtcaagcagcgtccactgtggagagtcctggtcgccctgtccatccgccac
gtgggccccaccgccgcccgtgccctggcgcaggagttcggctccctggagcggatcgtc
gcggccacggaagaggaactcgcctccgccgagggcgtgggcccgaccatcgccacagcc
gtgcgggagtgggtcgagaccccgtggcggcaggagatcgtgcggaagtggcaagccgcg
ggggtgcgcacggccgaggagcgcgacacctccgtcccgcgcaacctggccgggttgtcg
atcgtggtgacggggtcgctggagacgttctcgcgggacgaggcgaaggaggcgatcctg
tcgcgcggcggcaaggcggcgggctcggtgtcgaagaagaccgcgttcgtcgtcgtgggc
gagtcgccgggctccaaggcggagaaggcggaacagctgaaggtcccgatcctggacgaa
gctggcttccgcgtcctgctgaccaacggcccggaagccgccacggccatcgccaccatc
accgaaaccccgaccaccccccgaaacccccaccaccgaaccacccctccaaccctccac
ctcaccctgaccccaccaccaccaccgccctga
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