Streptococcus alactolyticus: O6R09_03125
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Entry
O6R09_03125 CDS
T08982
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sacy
Streptococcus alactolyticus
Pathway
sacy03030
DNA replication
sacy03410
Base excision repair
sacy03420
Nucleotide excision repair
sacy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sacy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O6R09_03125 (ligA)
03410 Base excision repair
O6R09_03125 (ligA)
03420 Nucleotide excision repair
O6R09_03125 (ligA)
03430 Mismatch repair
O6R09_03125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sacy03032
]
O6R09_03125 (ligA)
03400 DNA repair and recombination proteins [BR:
sacy03400
]
O6R09_03125 (ligA)
Enzymes [BR:
sacy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O6R09_03125 (ligA)
DNA replication proteins [BR:
sacy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O6R09_03125 (ligA)
DNA repair and recombination proteins [BR:
sacy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O6R09_03125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O6R09_03125 (ligA)
MMR (mismatch excision repair)
DNA ligase
O6R09_03125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O6R09_03125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WBB06929
LinkDB
All DBs
Position
582687..584645
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIQNLVDLLNQYRKEYYTDDKPTVSDSEYDVLYRELVDLEKAHPEWILPNSPTQEVG
GLILEGFEKYQHQVPLYSLQDAFSREELDDFDRRVKSEFPNASYMAELKIDGLSISLVYV
DGVLQVGATRGDGSVGENITENVKRIKDIPHRLKEPLTITVRGEAYLPKQSFDKINEERR
ENGQTEFANPRNAAAGTLRQLNTAVVAKRQLATFLYQEVGATQMTTQNAVLDELARYDFS
VNTKRITTSSMDEIWTFIQDIAEERDRLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKAAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLHVVESKRDQQVPMPIPTQCPSCGSELIHYEDEVALRCINPLCPS
QIQERLTHFASRDAMNITGLGPSMVKKLFEANLVHDVADIYQLSVADLLTLDGVKEKSAE
KLYQAIQVSKANSADKLLFGLGIRHVGAKVSRQLLEVFETIDALEQAPVDAIANIDGIGN
VIANSLHSYFAKEEAQTLLAELRTVAVNFAYLGQKASADAQLSGLTIVLTGKLEHFTRNE
AKEKLQALGAKVTGSVSKKTDLVIAGAEAGSKLDKAQSLGITIRDEEWLAGL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcgtattcaaaacctggttgacctactcaaccaataccgaaaagagtattat
acagacgataaaccaacggtgtcagatagtgaatatgacgtcctttaccgtgaattagtt
gaccttgaaaaagcacatccagagtggattttacccaatagcccaacacaagaagtcggt
gggcttattttagagggctttgaaaagtaccaacaccaagttcctctatatagcttacaa
gatgccttttcacgtgaagaattggacgactttgaccgccgtgtcaaatcagaatttcca
aatgcctcttacatggctgagttgaaaattgatggcttgtctatttcgctggtttatgtc
gacggtgtcttgcaagtgggggcgactcgtggcgatggttcggttggcgaaaatatcact
gaaaatgtcaaacgcatcaaggatattccccaccgtttgaaagaaccgctcacgattact
gtgcgtggtgaggcttaccttcccaaacaatcctttgacaaaatcaacgaagaacgtcgt
gaaaatggacagactgaatttgccaatcctagaaatgcagcggcgggtactctgcgtcag
ttaaatacggcagttgttgctaagcgccaactggctactttcttgtaccaagaagtagga
gcaactcagatgaccacacaaaatgcggtcttggatgagctggcgcgttatgacttttcg
gtgaatactaagcgtatcaccacgtcatcgatggatgagatttggacctttatccaagac
atcgctgaagagcgtgaccgtttgccttatgatattgacgggattgttatcaaggtaaac
agcctagccatgcaagaagaacttggtttcacagtgaaagcaccacgctgggccattgct
tataaatttccggcagaggaaaaggcagctgaaatcctatccgttgactggaccgttgga
cgaacaggggtagtgacgccaaccgctaacttaacacccgttcaattggcagggacgacc
gttagccgagcaaccttgcacaatgtggactacattgccgaaaaagacattcgtatcggt
gatacggttattgtttacaaggctggggacattattcctgctgttcttcatgtggttgaa
agtaaacgcgaccagcaagtaccgatgccaattccgacacagtgcccatcttgcggtagc
gagttgattcattatgaggatgaagtggctctgcgttgcatcaacccactttgtccaagc
caaattcaagagcgtttgacccattttgctagccgtgatgccatgaacattactggttta
ggaccgtcaatggtcaaaaaacttttcgaggccaatttggttcatgatgtggcggatatt
taccagttgagcgtggcggatttgctgactttggatggtgtcaaagaaaaatcagcagaa
aaactctatcaggctattcaggtttccaaggctaattctgcggataaattgttgtttggc
ttgggaattcgtcatgtgggagctaaggttagccgccaattattagaagtttttgaaacg
attgatgcgttagagcaagcacccgtggatgcgattgctaacattgatggcattggaaat
gtcatcgctaattctctgcacagctattttgcaaaagaagaagcccagaccttgctggca
gaattgcgaacagttgcggttaattttgcttatctaggtcaaaaagcgtccgctgatgcc
caattgtcaggcttgaccatcgtattgactggaaaattggagcatttcactcgcaatgaa
gccaaggaaaaattgcaagcattgggagcaaaagtaactggtagtgtgtctaaaaagaca
gaccttgtgattgctggggctgaggcaggctcaaaattggacaaggcacaaagtttgggc
attaccattcgtgatgaggaatggttagcaggtttataa
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