Stenotrophomonas acidaminiphila: AOT14_22660
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Entry
AOT14_22660 CDS
T04107
Symbol
ligA_2
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03030
DNA replication
sacz03410
Base excision repair
sacz03420
Nucleotide excision repair
sacz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOT14_22660 (ligA_2)
03410 Base excision repair
AOT14_22660 (ligA_2)
03420 Nucleotide excision repair
AOT14_22660 (ligA_2)
03430 Mismatch repair
AOT14_22660 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sacz03032
]
AOT14_22660 (ligA_2)
03400 DNA repair and recombination proteins [BR:
sacz03400
]
AOT14_22660 (ligA_2)
Enzymes [BR:
sacz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOT14_22660 (ligA_2)
DNA replication proteins [BR:
sacz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOT14_22660 (ligA_2)
DNA repair and recombination proteins [BR:
sacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOT14_22660 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOT14_22660 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
AOT14_22660 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOT14_22660 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
VMAP-M8
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ALJ28636
UniProt:
A0A0S1B0M8
LinkDB
All DBs
Position
complement(2490095..2492575)
Genome browser
AA seq
826 aa
AA seq
DB search
MTSEATARRRIAELRQQLATAAQAYHEHDEQLIPDADYDRLLRELEALEAAHPQLDSDDS
PSHQIGGRPSSRFPEVVHAVPMLSLGNAFSDDEVRDFVRRIDERLQRRTLVFSAEPKLDG
LAISLRYEDGVFVQGATRGDGSRGEDVTANLRQIKVIPARLEGAGWPAVLEVRGEVYMPR
ADFEKYNEQARLHGGKVLANPRNGAAGSLRQLDPKVSAQRPLSFYAYGTGEVDGGQLPPT
HSATLARLAQWGFPVSELCRVVEGVDGLLDYYRDIGARRDGLAFDIDGVVYKLDDRDGQR
EMGFVARAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLQPVQVAGVTVTNATL
HNADQIARLDVRVGDSVIVRRAGDVIPEVVSVIPGRRPPGALPWTMPPACPVCGAEIVRE
EGAAVWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDRYIEILVDAGIVRGVADLYRLQ
RDTLLLLKLALDAADPSALANGIAPHLPAGGSGEWLKALLRLDGNDPRWRAQALALPARF
EWNPKKIATRWADNLIAAIDASRTTTLERLLFALGIEHVGESTAKALAQWFGDLELIRQL
PWPLFKRVPDIGGEVARSLGHFFEQEGNQQAIDALLQVGRVRIGDVHLPSPRLREGLDLA
QLLVEAEIPGITRLRAEKLVAALPSAQQILDAEPQHLLAAGLPEDTAHGLAQWLDSDNHG
QLLLRGEAQMRRLLELAPVAAAQPAGPLDGQTVVLTGTLSALTRDAAKARLEALGAKVAG
SVSKKTAFVVAGSEAGSKLDKATELGVEVWDEPRLLAFLTEHGQHP
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgacttccgaagccaccgcccgccgccgcatcgccgaactccgccagcagctggccacg
gccgcacaggcctaccacgagcacgacgagcagctgattcccgatgccgattacgaccgg
ctgctgcgcgaactcgaagcgctggaggcggcccacccgcagctggacagcgacgattcg
cccagccaccagatcggcggcaggccgtcgtcgcggtttcccgaggtggtgcacgcggtg
ccgatgctgtcgctgggcaatgccttcagcgacgatgaagtgcgcgacttcgtgcgccgc
atcgacgagcgcctgcagcgccgcacgctggtgttttcggccgagcccaagctcgacggg
ctggcgatcagcctgcgctacgaggacggcgtgttcgtgcagggcgcgacccgcggcgac
ggcagccgcggcgaggacgtcaccgccaacctgcgccagatcaaggtgatcccggcccgg
ctcgaaggcgcgggctggccggcggtgctggaagtgcgcggcgaggtgtacatgccgcgc
gccgatttcgagaagtacaacgagcaggcgcgcctgcacggcggcaaggtgctggccaac
ccgcgcaacggcgccgccggctcgctgcgccagctcgacccgaaggtcagcgcccagcgt
ccgctgagcttctatgcctatggcaccggcgaggtcgacggcggccagctgccgcccacc
cattcggcgacgctggcacggctggcgcagtgggggttcccggtgagcgaactgtgccgg
gtggtcgagggtgtcgatggcctgctcgactactaccgcgacatcggcgcgcgccgcgac
gggctggcgttcgacatcgacggcgtggtctacaagctcgacgaccgcgacggccagcgc
gagatgggcttcgtcgcccgcgccccgcgctgggccatcgcccacaagttcccggcgcag
gagcagaccaccacggtcgaggcgatcgagatccagatcggccgcaccggcgccgccacg
ccggtggcgcgcctgcagccggtgcaggtggccggggtgaccgtcaccaacgccaccctg
cacaacgccgaccagatcgcgcggctggacgtgcgcgtgggcgacagcgtcatcgtgcgc
cgcgccggcgacgtgatccccgaagtggtgagcgtcatccccgggcgccgcccgcccggc
gcgctgccgtggacgatgccgccggcgtgcccggtatgcggtgccgagatcgtgcgcgag
gagggggcggcggtttggcgctgctcgggcgagctgagctgcccggcgcagcgcaaggag
gccatcgcccatttcgcctcgcgccgcgcgatggacatcgacgggctcggcgacaggtac
atcgaaatcctggtcgacgccggcatcgtgcgcggcgtggccgatctgtaccggctgcag
cgcgacaccctgctgctgctcaagctggcgctggatgcggccgatccctcggcgctggcc
aacggcatcgccccgcacctgccggccgggggcagcggtgaatggctcaaggcgctgctg
cgcctggatggcaacgatccgcgatggcgcgcgcaggcgctggcgttgccggcacgcttc
gagtggaacccgaagaagatcgccacccgctgggccgacaacctgatcgcggccatcgac
gccagccgcaccaccacgctggagcggctgctgttcgcgctgggcatcgagcatgtcggc
gagagcaccgccaaggcgctggcgcagtggttcggcgacctggaactgatccgccagctg
ccgtggccgctgttcaagcgcgtgcccgatatcggcggcgaggtggcgcgctcgctgggt
catttcttcgagcaggaaggcaaccagcaggcgatcgacgcgctgctgcaggtcgggcgg
gtacgcatcggcgacgtccacctgccgtcgccgcggctgcgcgaagggctggacctggcg
caactgctggtcgaagccgagattccgggcatcacccggctgcgcgcggagaaactggtg
gcggcgctgccgtcggcgcagcagatcctggacgccgagccgcagcacctgcttgccgcc
ggcctgccagaggacaccgcgcacggcctggcgcagtggctggacagcgacaaccacggg
caattgctgctcaggggcgaggcgcagatgcggcgcctgctggaactggccccggtggcg
gccgcgcagccggccgggccgctggacggccagaccgtggtgctgaccggcacgctgtcg
gcgctgacccgcgacgccgccaaggcgcggctggaagcgctgggcgccaaggtcgccggc
agcgtttcgaagaagaccgccttcgtggttgccggcagcgaggccggctccaaactggac
aaggccaccgaactgggcgtggaggtgtgggacgaaccgcgcctgctcgccttcctcacc
gaacacggacaacacccatga
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