Sulfurihydrogenibium azorense: SULAZ_1383
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Entry
SULAZ_1383 CDS
T00876
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saf
Sulfurihydrogenibium azorense
Pathway
saf03030
DNA replication
saf03410
Base excision repair
saf03420
Nucleotide excision repair
saf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SULAZ_1383 (ligA)
03410 Base excision repair
SULAZ_1383 (ligA)
03420 Nucleotide excision repair
SULAZ_1383 (ligA)
03430 Mismatch repair
SULAZ_1383 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saf03032
]
SULAZ_1383 (ligA)
03400 DNA repair and recombination proteins [BR:
saf03400
]
SULAZ_1383 (ligA)
Enzymes [BR:
saf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SULAZ_1383 (ligA)
DNA replication proteins [BR:
saf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SULAZ_1383 (ligA)
DNA repair and recombination proteins [BR:
saf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SULAZ_1383 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SULAZ_1383 (ligA)
MMR (mismatch excision repair)
DNA ligase
SULAZ_1383 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SULAZ_1383 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
HHH
zf-IS66
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACN99112
UniProt:
C1DW63
LinkDB
All DBs
Position
complement(1289762..1291867)
Genome browser
AA seq
701 aa
AA seq
DB search
MYSEETQRKLIEKTREFLNLDIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYE
YDKLFKLLKDIESKYPDLITPDSPTQRVPSEITKVFPQVKHLTPMLSLDNSYNEADLRDF
DRRVRELTGLEKIEYAVEPKFDGAGISLIYEKDLFKRGATRGDGEVGEDITNNLKVIKSI
PLSAKFSSYGIDKVEIRGEVLIRKDIFKRINEQRLEEGLPLFANPRNAAAGSIRLQDPKE
VAKRGLEAFVYQITYAEKDGKNLLGTVLKKHSDNIKMLHLLGFKTPYEVLKVCNGIDEVI
DYCREWERKRDNYPYEIDGMVIKVNDISLYEKLGFTSHHPRWAIAYKFKARQATTKIIDV
VFQVGRTGAITPVAKLQPVEIGGVIVSSVSLFNEDFIREKDIRIGDTVLVERAGDVIPYV
VMVIKEARTGNEKPIEFPKNCPSCGSPLVKPLGEAVYRCININCPAQVIERIIHFASKDA
MDIKGLSEATVKKFYKLGLLKSIPDIYRLDFRIIKNIQGFGEKSVNNLKQAIEESKNRPL
YRLIYGLGIRYVGEVTAKTLASAVNCLEDLKNFTITDLMKLPDIGDKVATEIYNFFHNEQ
NLKMIQQLKELGVNVCNPKEEKRGKLAGLNFVFTGALKCCSREKAKEIVESLGGNVLDTV
SKKVHYLVVGEEPGSKLQKAQKIPTIKIINEEEFLKMIGQQ
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtactcagaggaaacccaaaggaaacttattgaaaaaacaagggagtttttaaatctt
gatataaaatcaattgatagaaaaaaagcagaaagtataatagaagacttaagagaagtt
attagatttcatgactggagatactacgttttagctcaacctgtaatatctgattatgag
tatgataaactttttaaactattaaaagatatagaaagtaaatatccagatttaataact
ccagactcaccaacccaaagagttccttctgagataacaaaagtatttccacaagtaaaa
catcttactccaatgttatctttagataactcttacaatgaagctgacttaagagatttt
gatagaagagtaagagagcttacaggacttgaaaagattgagtatgcagttgaacctaag
tttgacggagctggcatatctcttatttacgagaaagacctctttaaaagaggagctaca
agaggagatggagaagtaggagaggatataacaaacaacctaaaagtaattaaatcaatt
cctttgtctgcaaaattttcaagctacggtatagacaaagttgaaatcagaggagaagtg
ttaataagaaaagatatatttaaaaggataaatgaacaaagacttgaagaaggtttacct
ctttttgcaaacccaagaaatgcagctgctggttcaataaggctccaagacccaaaagaa
gttgcaaagagaggacttgaggcttttgtttatcaaattacatacgcagaaaaagacggt
aaaaatttacttggaactgtcctaaaaaaacattctgacaacattaaaatgctacatcta
cttggatttaaaacaccttacgaagttttaaaagtgtgtaatggtatagacgaagtaatt
gattactgtagagaatgggaaagaaaaagagataactacccttatgaaatagatggaatg
gttattaaagtaaacgatatatctctttatgaaaagttaggttttacttctcaccatcca
agatgggcaatagcttataaatttaaagcaagacaagcaactacaaagataatagatgtg
gtttttcaagtaggaaggacaggagcaataacacctgttgcaaaactgcaacctgtagag
ataggaggagtaattgtttcatctgtatcactttttaacgaagattttattagagaaaaa
gatataagaataggagatacagttttagtagaaagagctggtgatgttataccttatgta
gttatggttataaaagaagcgcgaacaggaaatgaaaaacctatagagtttccaaaaaac
tgtccttcttgcggctcaccacttgtaaaaccattaggagaagctgtttacagatgtatc
aacattaactgtccagctcaagtaattgaaagaataattcattttgcttcaaaagatgca
atggatataaaaggactatcagaagcaacagttaaaaagttttataaacttggactttta
aaaagtatcccagatatttacaggcttgattttagaattataaaaaacattcaaggcttt
ggagaaaaatcagtaaacaacttaaaacaagctatagaagaatcaaaaaatagaccctta
tacagacttatttatggacttggtataaggtacgtaggagaagttacagcaaaaacctta
gcatcagctgtaaactgcttagaagaccttaagaattttacaataactgatctaatgaaa
cttcctgatattggcgacaaagttgcgacagaaatttataactttttccacaacgaacaa
aacttgaaaatgatacagcagttaaaagagttaggcgttaacgtatgtaatcctaaagaa
gagaaaagaggtaagttggcaggtttaaactttgtatttacaggagcattaaaatgttgt
agtagagaaaaggcaaaagaaattgtggaaagtttaggagggaatgtccttgacacagtc
tctaaaaaagtccattacttagtagtaggagaagaaccgggaagtaaactccaaaaagca
caaaaaataccaacaataaaaataataaatgaagaagagtttttaaagatgataggtcaa
caatga
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