Streptococcus agalactiae CJB111: ID870_05035
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Entry
ID870_05035 CDS
T08770
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sagj
Streptococcus agalactiae CJB111
Pathway
sagj03030
DNA replication
sagj03410
Base excision repair
sagj03420
Nucleotide excision repair
sagj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sagj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ID870_05035 (ligA)
03410 Base excision repair
ID870_05035 (ligA)
03420 Nucleotide excision repair
ID870_05035 (ligA)
03430 Mismatch repair
ID870_05035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagj03032
]
ID870_05035 (ligA)
03400 DNA repair and recombination proteins [BR:
sagj03400
]
ID870_05035 (ligA)
Enzymes [BR:
sagj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ID870_05035 (ligA)
DNA replication proteins [BR:
sagj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ID870_05035 (ligA)
DNA repair and recombination proteins [BR:
sagj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ID870_05035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ID870_05035 (ligA)
MMR (mismatch excision repair)
DNA ligase
ID870_05035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ID870_05035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
UPF0758_N
RTT107_BRCT_5
BRCT_2
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QOW77710
LinkDB
All DBs
Position
882714..884672
Genome browser
AA seq
652 aa
AA seq
DB search
MENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG
GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKAEFPTAAYMAELKIDGLSVSLTYV
NGVLQVGATRGDGNIGENITENLKRVHDIPLHLDQSLDITVRGECYLPKESFEAINIEKR
ANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQEASPTQKETQDDVLKELESYGFS
VNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGSELVHFEGEVALRCINPLCPN
QIKERLAHFASRDAMNITGFGPSLVEKLFDAHLIADVADIYRLSIENLLTLDGIKEKSAT
KIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGG
VIAKSLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNE
AKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcgtatgaatgaattagtatctttgttgaatcagtacgcaaaagagtattat
acacaagataatcccacagtttctgacagtcaatatgaccagttatatcgagagttagta
gaattagaaaagcaacatccagaaaacattttgccaaatagtcccacacatcgagtgggt
ggtttagttttagaaggctttgaaaaataccaacatgaatatcctttgtattcattgcag
gatgctttctcaaaagaagaattgatagcctttgataaacgtgttaaagcagagtttcca
actgctgcttatatggcagagctgaaaattgatggtctatctgtctcgttgacttatgta
aatggtgttttacaggttggggcaacacgtggtgatggcaatattggagaaaatattact
gaaaatttaaagcgtgttcatgatattcctctacatttagaccaaagtttagatattact
gttcgcggagagtgctaccttcccaaagaatcttttgaagctattaacatagaaaaacga
gcaaatggtgagcaggaatttgctaatcctaggaatgcagcagcaggaaccttgcgccaa
ttaaacacaggaattgttgcgaaacgtaaattagcaacttttctttatcaagaagctagc
cctacgcaaaaagaaacacaagatgatgttttaaaagagctagaaagctatggcttttca
gtcaatcatcatcgtttaattagctcgtctatggagaaaatttgggattttatccaaact
atagaaaaagatagagtttccctcccttatgatatcgatggtattgttattaaggttaat
agcttagcaatgcaagaagagctgggcttcactgtaaaggcacctcgttgggcgattgca
tataaatttcctgctgaagaaaaggaagcagaaatattatctgttgattggacagttggg
cgaacaggagtcgtaacaccaacagctaacctaactccagttcaactagcagggacaacc
gttagtagggccactctgcataatgtagattatattgccgaaaaagatatccgtattgga
gatactgttgttgtatacaaagcaggggatatcatccctgcagtcttaaatgtcgttatg
agtaagcgaaaccagcaagaagtcatgcttattcctaaactatgtccttcttgtggtagt
gaattagttcattttgaaggtgaggtggctttacgttgtattaatccgctgtgccccaac
caaatcaaagaacgtttagctcattttgctagccgagatgctatgaatattacaggtttt
ggtccatccttagtcgaaaaattatttgatgctcatttaatagcagatgttgcagatatt
tatcgtttaagtatagagaatttattaactttagatggtattaaagagaaatctgcaact
aagatttatcatgcaatccaatcttcaaaagaaaattctgctgaaaaacttctttttggc
ctaggtattcgtcatgtgggaagcaaggcgagccgccttttattggaggaatttggtaat
ttgaggcaactaagtcaagcaagtcaagaaagtattgcctcaattgatggactaggaggg
gttattgccaaatcacttcataccttctttgaaaaagaagaggtagataaactactagag
gaattaacttcctataacgttaattttaattatctaggaaaacgagttagtacagatgca
caactttcaggtttaacagtcgttttaaccggtaagcttgaaaaaatgactcgtaatgaa
gcaaaagagaaattacaaaaccttggtgctaaggtgacaggtagcgtttctaaaaagact
gatttaattgttgcaggaagcgatgcaggaagtaaactaaccaaggctcaagatttaggg
attacaatacaagatgaagactggttactcaacctttaa
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