Streptococcus agalactiae CNCTC 10/84: W903_0940
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Entry
W903_0940 CDS
T03518
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sagn
Streptococcus agalactiae CNCTC 10/84
Pathway
sagn03030
DNA replication
sagn03410
Base excision repair
sagn03420
Nucleotide excision repair
sagn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sagn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
W903_0940 (ligA)
03410 Base excision repair
W903_0940 (ligA)
03420 Nucleotide excision repair
W903_0940 (ligA)
03430 Mismatch repair
W903_0940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagn03032
]
W903_0940 (ligA)
03400 DNA repair and recombination proteins [BR:
sagn03400
]
W903_0940 (ligA)
Enzymes [BR:
sagn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
W903_0940 (ligA)
DNA replication proteins [BR:
sagn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
W903_0940 (ligA)
DNA repair and recombination proteins [BR:
sagn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
W903_0940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
W903_0940 (ligA)
MMR (mismatch excision repair)
DNA ligase
W903_0940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W903_0940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
UPF0758_N
RTT107_BRCT_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIX04628
LinkDB
All DBs
Position
851982..853928
Genome browser
AA seq
648 aa
AA seq
DB search
MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVGGLVL
EGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKAEFPTAAYMAELKIDGLSVSLTYVNGIL
QVGATRGDGNIGENITENLKRVHDIPLHLDQSLDITVRGECYLPKESFEAINIEKRANGE
QEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQEASPTQKETQDDVLKELESYGFSVNHH
RLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFP
AEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVV
VYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGSELVHFEDEVALRCINPLCPNQIKE
RLAHFASRDAMNITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYH
AIQSSKENSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAK
SLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEK
LQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattagtatctttgttgaatcagtacgcaaaagagtattatacacaagataat
cccacagtttctgacagtcaatatgaccagttatatcgagagttagtagaattagaagag
caacatccagaaaacattttgccaaatagtcccacacatcgagtgggtggtttagtttta
gaaggctttgaaaaatatcaacatgaatatcctttgtattcattgcaggatgctttctca
aaagaagaattgatagcctttgataaacgtgttaaagcagagtttccaactgctgcttat
atggcagagctgaaaattgatggtctatctgtctcgttgacttatgtaaatggtatttta
caggttggggcaacacgtggtgatggcaatattggagaaaatattactgaaaatttaaag
cgtgttcatgatattcctctacatttagaccaaagtttagatattactgttcgcggagag
tgctaccttcccaaagaatcttttgaagctattaacatagaaaaacgtgcaaatggtgag
caggaatttgctaatcctaggaatgcagcagcagggaccttgcgccaattaaacacagga
attgttgcgaaacgtaaattagcaacttttctttatcaagaagctagtcctacgcaaaaa
gaaacacaagatgatgttttaaaagagctagaaagctatggcttttcagtcaatcatcat
cgtttaattagctcttctatggagaaaatttgggattttatccaaactatagaaaaagat
agagtttcccttccttatgatatcgatggtattgttattaaggttaatagcttagcaatg
caagaagagttgggcttcactgtaaaggcacctcgttgggcgattgcatataaatttcct
gctgaagaaaaggaagcagaaatattatctgttgattggacagttgggcgaacaggagtc
gtaacaccaacagctaacctaactccagttcaactagcagggacaaccgttagtagggct
actctgcataatgtagattatattgccgaaaaagatatccgtattggagatactgttgtt
gtatacaaagcaggggatatcatccctgcagtcttaaatgtcgttatgagtaagcgaaac
cagcaagaagtcatgcttattcctaaactatgtccttcttgtggtagtgaattagttcat
tttgaagatgaggtggctttacgttgtattaatccgctgtgccccaaccaaatcaaagaa
cgtttagctcattttgctagccgagatgctatgaatatcacaggttttggtccatcctta
gtcgaaaaattatttgatgctcatttaatagcagatgttgcagatatttatcgtttaagc
atagaggatttattaactttagatggtattaaagagaaatctgcaactaagatttatcat
gcaatccaatcttcaaaagaaaattctgctgaaaaacttctttttggcctaggtattcgt
catgtgggaagcaaggcgagccgccttttattggaggaatttggtaatttgaggcaacta
agtcaagcaagtcaagaaagtattgcctcaattgatggactaggaggggttattgccaaa
tcacttcatacgttctttgaaaaagaagaggtagataaactactagaggaattaacttcc
tataacgttaattttaattatctaggaaaacgagttagtacagatgcacaactttcaggt
ttaacagtcgttttaaccggtaagcttgaaaaaatgactcgtaatgaagcaaaagagaaa
ttacaaaaccttggtgctaaggtgacaggtagcgtttctaaaaagactgatttaattgtt
gcaggaagcgatgcaggaagtaaactaaccaaggctcaagatttagggattacaatacaa
gatgaagactggttactcaacctttaa
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