Staphylococcus agnetis: EP23_05695
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Entry
EP23_05695 CDS
T04155
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sagq
Staphylococcus agnetis
Pathway
sagq03030
DNA replication
sagq03410
Base excision repair
sagq03420
Nucleotide excision repair
sagq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sagq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EP23_05695 (ligA)
03410 Base excision repair
EP23_05695 (ligA)
03420 Nucleotide excision repair
EP23_05695 (ligA)
03430 Mismatch repair
EP23_05695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagq03032
]
EP23_05695 (ligA)
03400 DNA repair and recombination proteins [BR:
sagq03400
]
EP23_05695 (ligA)
Enzymes [BR:
sagq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EP23_05695 (ligA)
DNA replication proteins [BR:
sagq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EP23_05695 (ligA)
DNA repair and recombination proteins [BR:
sagq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EP23_05695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EP23_05695 (ligA)
MMR (mismatch excision repair)
DNA ligase
EP23_05695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EP23_05695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
AphA_like
Zn_ribbon_NUD
PTCB-BRCT
Nlig-Ia
FAD_binding_4
DUF7575
Motif
Other DBs
NCBI-ProteinID:
ALN76882
UniProt:
A0A2T4MGL0
LinkDB
All DBs
Position
complement(1128293..1130290)
Genome browser
AA seq
665 aa
AA seq
DB search
MDLKARVRVLHERLHQYNYEYHVLDNPSVPDSEYDKLLHELIEIESQHPELKAADSPTVR
VGGEAQSTFEKVRHDTPMLSLSNAFNETDLRRFDQRVRDAVGEVEYMCELKIDGLAVSLK
YVDGRFVQGLTRGDGTTGEDITENLKTIHAIPLTLKEPISFEVRGEAYMPRQSFLRLNDE
KEKKGEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDATSQSEALAELDQ
LGFKTNPERMNVKTIDDVLAYIDKWTSERDTLSYDIDGIVIKVNAIEHQEEMGFTQKSPR
WAIAYKFPAEEVVTTLEDIELSIGRTGVVTPTAILTPVHVAGTTVSRASLHNEDLIHERD
IRIGDHVVVKKAGDIIPEVVKVILDRRSDDAQPYRMPTHCPSCGHELVRIEGEVALRCIN
PKCQAQLIEGLKHFVSRQAMNIDGLGTKIIEQLYHHHLIKDVADIFYLEKNDLLPLERMG
EKKADNLIKAIEKSKSQSLEHLLFGLGIRHLGVKASQVLAEKYDTMERLMQVTEAELVEI
YDVGEKLAQSFVTYMSNEDIQKLIQKMSQHHVNMTYTGQKSSQIDGHPDFKNKTVVLTGK
LEQMTRTEASQWLKNHGAKVTSSVTKSTDLVIAGKDAGSKLTKAETLGTPIWNEQDFIDK
QNEIN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaaggcgcgcgtgcgtgtattgcatgaacggttacatcaatacaattatgaa
tatcacgtattagataacccaagtgttccagacagtgaatatgataaattgttgcatgaa
ttaatagaaattgaatcacaacaccctgaacttaaagctgcagattcaccaacggtacgt
gtgggtggagaagcacaatcgacgtttgaaaaagttcgacatgacacgccgatgctaagt
ttatctaatgcatttaatgagacagatttacgtcgttttgatcaacgtgtaagagatgct
gtaggggaagtcgaatacatgtgtgaattgaaaatagacggtttagctgtgtcattgaaa
tatgttgacggtcgttttgtccaaggattaacgcgtggagatggaacgacaggtgaagat
ataacagaaaatttaaaaacgattcacgcaatcccactcacattaaaagaaccgatttct
tttgaagtacgtggagaggcctatatgcctcgtcaatcgtttttgaggcttaacgatgaa
aaagagaaaaagggtgaacaaccgtttgctaacccccgcaatgcggctgcgggttcgcta
cgtcaactagattcaaaattagccgcagcacgtaaacttgatatttttctatacagtata
aatgatttcacagagttagatgccacatcacaaagtgaagcattagctgaattggatcaa
ctaggattcaaaacaaatcctgaacggatgaatgtcaaaaccatagacgatgtactggcg
tatattgacaagtggacctcagaacgtgatacattaagttatgatatcgatggtattgtt
atcaaagtgaacgccattgagcatcaagaggagatgggttttacccaaaaatcaccgaga
tgggccattgcatataagtttcctgctgaagaagttgtcactactttagaagacattgag
ttaagtattggtcgtactggtgtggtgacacctactgcaattttaactccagttcatgta
gcggggacgactgtttctagagcctcattacataatgaagacctaattcatgaaagagat
atacgaataggtgatcatgttgttgtgaaaaaagccggtgatatcatacctgaagtggtt
aaagtcattttagatcgtcggtcagatgacgctcagccttatcgcatgccaacacattgc
ccgagttgtggtcatgaacttgtacgcattgaaggtgaagttgcattaaggtgtatcaac
ccaaaatgccaagcgcaattgatagaaggattaaaacattttgtatcgagacaagcgatg
aatattgatggtttaggcactaaaatcatagaacaactttatcatcatcatttaatcaaa
gacgtggcagatatattttatcttgaaaagaacgatctattacctcttgaacgtatgggt
gaaaagaaagcagataaccttattaaggcgattgaaaaatctaaatcacaatcattagaa
catctattatttggcctaggtattcgtcacttaggtgtcaaagccagtcaagtgcttgca
gaaaagtatgatacgatggaacgtttaatgcaagtcacagaagcggaacttgtggaaata
tatgacgtaggtgaaaagttagcacaatcctttgtaacttatatgagcaatgaggatatt
caaaagttaattcaaaaaatgtcacaacatcatgtaaacatgacttacactggtcaaaaa
tcatcacaaattgatggccatcctgattttaaaaataaaactgttgtattgactggtaaa
ttagagcaaatgacaagaactgaggcatcacaatggttgaaaaatcatggtgccaaggtg
acaagtagtgtaacaaaatcaacagaccttgttattgcaggtaaagatgctggctctaag
ttaacgaaagcagagacattagggacaccaatttggaatgaacaagactttattgataag
caaaatgaaatcaattaa
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