Streptococcus agalactiae ILRI112: SAIL_9940
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Entry
SAIL_9940 CDS
T02705
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sagr
Streptococcus agalactiae ILRI112
Pathway
sagr03030
DNA replication
sagr03410
Base excision repair
sagr03420
Nucleotide excision repair
sagr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sagr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAIL_9940
03410 Base excision repair
SAIL_9940
03420 Nucleotide excision repair
SAIL_9940
03430 Mismatch repair
SAIL_9940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagr03032
]
SAIL_9940
03400 DNA repair and recombination proteins [BR:
sagr03400
]
SAIL_9940
Enzymes [BR:
sagr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAIL_9940
DNA replication proteins [BR:
sagr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAIL_9940
DNA repair and recombination proteins [BR:
sagr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAIL_9940
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAIL_9940
MMR (mismatch excision repair)
DNA ligase
SAIL_9940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAIL_9940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
UPF0758_N
RTT107_BRCT_5
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CCW42011
LinkDB
All DBs
Position
901007..902953
Genome browser
AA seq
648 aa
AA seq
DB search
MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVGGLVL
EGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKAEFPTASYMAELKIDGLSVSLTYVNGIL
QVGATRGDGNIGENITENLKRVHDIPLHLDQSLDITVRGECYLPKESFEAINIEKRANGE
QEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQEASPTQKETQDDVLKELESYGFSVNHH
RLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIAYKFP
AEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVV
VYKAGDIIPAVLNVVMSKRNQQEVMFIPKLCPSCGSELVHFEDEVALRCINPLCPNQIKE
RLAHFASRDAMNITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYH
AIQSSKENSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAK
SLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNEAKEK
LQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattagtatctttgttgaatcagtacgcaaaagagtattatacacaagataat
cccacagtttctgacagtcaatatgaccagttatatcgagagttagtagaattagaagag
caacatccagaaaacattttgccaaatagtcccacacatcgagtgggtggtttagtttta
gaaggctttgaaaaataccaacatgaatatcctttgtattcattgcaggatgctttctca
aaagaagaattgatagcctttgataaacgtgttaaagcagagtttccaactgcttcttat
atggcagagctgaaaattgatggtctatctgtctcgttgacttatgtaaatggtatttta
caggttggggcaacacgtggtgatggcaatattggagaaaatattactgaaaatttaaag
cgtgttcatgatattcctctacatttagaccaaagtttagatattactgttcgcggagag
tgctaccttcccaaagaatcttttgaagctattaacatagaaaaacgtgcaaatggtgag
caggaatttgctaatcctaggaatgcagcagcaggaaccttgcgccaattaaacacagga
attgttgcgaaacgtaaattagcaacttttctttatcaagaagctagccctacgcaaaaa
gaaacacaagatgatgttttaaaggagctagaaagctatggcttttcagtcaatcatcat
cgtttaattagctcttctatggagaaaatttgggattttatccaaactatagaaaaagat
agaatttccctcccttatgatatcgatggtattgttattaaggttaatagcttagcaatg
caagaagagttgggcttcactgtaaaggcacctcgttgggcgattgcatataaatttcct
gctgaagaaaaggaagcagaaatattatctgttgattggacagttgggcgaacaggagtc
gtaacaccaacagctaacctaactccagttcaactagcagggacaaccgttagtagggcc
actctgcataatgtagattatattgccgaaaaagatatccgtattggagatactgttgtt
gtatacaaagcaggggatatcatccctgcagtcttaaatgtcgttatgagtaagcgaaac
cagcaagaagtcatgtttattcctaaactatgtccttcttgtggtagtgaattagttcat
tttgaagacgaggtggctttacgttgtattaatccgctgtgccccaaccaaatcaaagaa
cgtttagctcattttgctagccgagatgctatgaatattacaggttttggtccatcctta
gtcgaaaaattatttgatgctcatttaatagcagatgttgcagatatttatcgtttaagc
atagaggatttattaactttagatggtattaaagagaaatctgcaactaagatttatcat
gcaatccaatcttcaaaagaaaattctgctgaaaaacttctttttggcctaggtattcgt
catgtgggaagcaaggcgagccgccttttattggaggaatttggtaatttgaggcaacta
agtcaagcaagtcaagaaagtattgcctcaattgatggactaggaggggttattgccaaa
tcacttcatacgttctttgaaaaagaagaggtagataaactactagaggaattaacttcc
tataacgttaattttaattatctaggaaaacgagttagtacagatgcacaactttcaggt
ttaacagtcgttttaaccggtaagcttgaaaaaatgactcgtaatgaagcaaaagagaaa
ttacaaaaccttggtgctaaggtgacaggtagcgtttctaaaaagactgatttaattgtt
gcaggaagcgatgcaggaagtaaactaaccaaggctcaagatttagggattacaatacaa
gatgaagactggttactcaacctttaa
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