Streptococcus agalactiae SA20: SaSA20_0725
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Entry
SaSA20_0725 CDS
T02338
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sags
Streptococcus agalactiae SA20
Pathway
sags03030
DNA replication
sags03410
Base excision repair
sags03420
Nucleotide excision repair
sags03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sags00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SaSA20_0725 (ligA)
03410 Base excision repair
SaSA20_0725 (ligA)
03420 Nucleotide excision repair
SaSA20_0725 (ligA)
03430 Mismatch repair
SaSA20_0725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sags03032
]
SaSA20_0725 (ligA)
03400 DNA repair and recombination proteins [BR:
sags03400
]
SaSA20_0725 (ligA)
Enzymes [BR:
sags01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SaSA20_0725 (ligA)
DNA replication proteins [BR:
sags03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SaSA20_0725 (ligA)
DNA repair and recombination proteins [BR:
sags03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SaSA20_0725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SaSA20_0725 (ligA)
MMR (mismatch excision repair)
DNA ligase
SaSA20_0725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SaSA20_0725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
UPF0758_N
RTT107_BRCT_5
BRCT_2
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AFV72191
LinkDB
All DBs
Position
757555..759513
Genome browser
AA seq
652 aa
AA seq
DB search
MENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG
GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKAEFPTASYMAELKIDGLSVSLTYV
NGILQVGATRGDGNIGENITENLKRVHDIPLHLDQSLDITVRGECYLPKESFEAINIEKR
ANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQEASPTQKETQDDVLKELESYGFS
VNHHRLISSSMEKIWDFIQTIEKDRVSLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGSELVHFEDEVALRCINPLCPN
QIKERLAHFASRDAMNITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSAT
KIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLLGEFGNLRQLSQASQESIASIDGLGG
VIAKSLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDGQLSGLTVVLTGKLEKMTRNE
AKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcgtatgaatgaattagtatctttgttgaatcagtacgcaaaagagtattat
acacaagataatcccacagtttctgacagtcaatatgaccagttatatcgagagttagta
gaattagaagagcaacatccagaaaacattttgccaaatagtcccacacatcgagtgggt
ggtttagttttagaaggctttgaaaaataccaacatgaatatcctttgtattcattgcag
gatgctttctcaaaagaagaattgatagcctttgataaacgtgttaaagcagagtttcca
actgcttcttatatggcagagctgaaaattgatggtctatctgtctcgttgacttatgta
aatggtattttacaggttggggcaacacgtggtgatggcaatattggagaaaatattact
gaaaatttaaagcgtgttcatgatattcctctacatttagaccaaagtttagatattact
gttcgcggagagtgctaccttcccaaagaatcttttgaagctattaacatagaaaaacgt
gcaaatggtgagcaggaatttgctaatcctaggaatgcagcagcagggaccttgcgccaa
ttaaacacaggaattgttgcgaaacgtaaattagcaacttttctttatcaagaagctagc
cctacacaaaaagaaacacaagatgatgttttaaaagagctagaaagctatggcttttca
gtcaatcatcatcgtttaattagctcttctatggagaaaatttgggattttatccaaact
atagaaaaagatagagtttcccttccttatgatatcgatggtattgttattaaggttaat
agcttagcaatgcaagaagagttgggcttcactgtaaaggcacctcgttgggcgattgca
tataaatttcctgctgaagaaaaggaagcagaaatattatctgttgattggacagttggg
cgaacaggagtcgtaacaccaacagctaacctaactccagttcaactagcagggacaacc
gttagtagggccactctgcataatgtagattatattgccgaaaaagatatccgtattgga
gatactgttgttgtatacaaagcaggggatatcatccctgcagtcttaaatgtcgttatg
agtaagcggaaccagcaagaagtcatgcttattcctaaactatgcccttcttgtggtagt
gaattagttcattttgaagatgaggtggctttacgttgtattaatccgctgtgccccaac
caaatcaaagaacgtttagctcattttgctagccgagatgctatgaatattacaggtttt
ggtccatccttagtcgaaaaattatttgatgctcatttaatagcagatgttgcagatatt
tatcgtttaagtatagaggatttattaactttagatggtattaaagagaaatctgcaact
aagatttatcatgcaatccaatcttcaaaagaaaattctgctgaaaaacttctttttggt
ctaggtattcgtcatgtgggaagcaaggcgagccgccttttattgggggaatttggtaat
ttgaggcaattaagtcaagcaagtcaagaaagtattgcctcaattgatggactaggaggg
gttattgccaaatcacttcatacgttctttgaaaaagaagaggtagataaactactagag
gaattaacttcctataacgttaattttaattatctaggaaaacgagttagtacagatgga
caactttcaggtttaacagtcgttttaaccggaaaacttgaaaagatgactcgtaatgaa
gcaaaagagaaattacaaaaccttggtgctaaggtgacaggtagcgtttctaaaaagact
gatttaattgttgcaggaagcgatgcaggaagtaaactaaccaaggctcaagatttaggg
attacaatacaagatgaagactggttactcaacctttaa
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