Streptococcus agalactiae COH1: GBSCOH1_0775
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Entry
GBSCOH1_0775 CDS
T03434
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sagt
Streptococcus agalactiae COH1
Pathway
sagt03030
DNA replication
sagt03410
Base excision repair
sagt03420
Nucleotide excision repair
sagt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sagt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBSCOH1_0775
03410 Base excision repair
GBSCOH1_0775
03420 Nucleotide excision repair
GBSCOH1_0775
03430 Mismatch repair
GBSCOH1_0775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagt03032
]
GBSCOH1_0775
03400 DNA repair and recombination proteins [BR:
sagt03400
]
GBSCOH1_0775
Enzymes [BR:
sagt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GBSCOH1_0775
DNA replication proteins [BR:
sagt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GBSCOH1_0775
DNA repair and recombination proteins [BR:
sagt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GBSCOH1_0775
NER (nucleotide excision repair)
GGR (global genome repair) factors
GBSCOH1_0775
MMR (mismatch excision repair)
DNA ligase
GBSCOH1_0775
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GBSCOH1_0775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
UPF0758_N
RTT107_BRCT_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CDN66241
LinkDB
All DBs
Position
809725..811683
Genome browser
AA seq
652 aa
AA seq
DB search
MENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG
GLVLEGFEKYQHEYPLYSLQDAFSKEELIAFDKRVKAEFPTASYMAELKIDGLSVSLTYV
NGILQVGATRGDGNIGENITENLKRVHDIPLHLDQSLDITVRGECYLPKESFEAINIEKR
ANGEQEFANPRNAAAGTLRQLNTGIVAKRKLATFLYQEASPTQKETQDDVLKELESYGFS
VNHHRLISSSMEKIWDFIQTIEKDRISLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGSELVHFEDEVALRCINPLCPN
QIKERLAHFASRDAMNITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSAT
KIYHAIQSSKENSAEKLLFGLGIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGG
VIAKSLHTFFEKEEVDKLLEELTSYNVNFNYLGKRVSTDAQLSGLTVVLTGKLEKMTRNE
AKEKLQNLGAKVTGSVSKKTDLIVAGSDAGSKLTKAQDLGITIQDEDWLLNL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcgtatgaatgaattagtatctttgttgaatcagtacgcaaaagagtattat
acacaagataatcccacagtttctgacagtcaatatgaccagttatatcgagagttagta
gaattagaagagcaacatccagaaaacattttgccaaatagtcccacacatcgagtgggt
ggtttagttttagaaggctttgaaaaataccaacatgaatatcctttgtattcattgcag
gatgctttctcaaaagaagaattgatagcctttgataaacgtgttaaagcagagtttcca
actgcttcttatatggcagagctgaaaattgatggtctatctgtctcgttgacttatgta
aatggtattttacaggttggggcaacacgtggtgatggcaatattggagaaaatattact
gaaaatttaaagcgtgttcatgatattcctctacatttagaccaaagtttagatattact
gttcgcggagagtgctaccttcccaaagaatcttttgaagctattaacatagaaaaacgt
gcaaatggtgagcaggaatttgctaatcctaggaatgcagcagcaggaaccttgcgccaa
ttaaacacagggattgttgcgaaacgtaaattagcaacttttctttatcaagaagctagc
cctacgcaaaaagaaacacaagatgatgttttaaaagagctagaaagctatggcttttca
gtcaatcatcatcgtttaattagctcttctatggagaaaatttgggattttatccaaact
atagaaaaagatagaatttccctcccttatgatatcgatggtattgttattaaggttaat
agcttagcaatgcaagaagagttgggcttcactgtaaaggcacctcgttgggcgattgca
tataaattccctgctgaagaaaaggaagcagaaatattatctgttgattggacagttggg
cgaacaggagttgtaacaccaacagctaacctaactccagttcaactagcagggacaacc
gttagtagggccactctgcataatgtagattatattgccgaaaaagatatccgtattgga
gatactgttgttgtatacaaagcaggggatatcatccctgcagtcttaaatgtcgttatg
agtaagcgaaaccagcaagaagtcatgcttattcctaaactatgtccttcttgtggtagt
gaattagttcattttgaagatgaggtggctttacgttgtattaatccgctgtgccccaac
caaatcaaagaacgtttagctcattttgctagccgggatgctatgaatattacaggtttt
ggtccatccttagtcgaaaaattatttgatgctcatttaatagcagatgttgcagatatt
tatcgtttaagtatagaggatttattaactttagatggtattaaagagaaatctgcaact
aagatttatcatgcaatccaatcttcaaaagaaaattctgctgaaaaacttctttttggc
ctaggtattcgtcatgtgggaagcaaggcgagccgccttttattggaggaatttggtaat
ttgaggcaactaagtcaagcaagtcaagaaagtattgcctcaattgatggactaggaggg
gttattgccaaatcacttcatacgttctttgaaaaagaagaggtagataaactactagag
gaattaacttcctataacgttaattttaattatctaggaaaacgagttagtacagatgca
caactttcaggtttaacagtcgttttaaccggaaaacttgaaaagatgactcgtaatgaa
gcaaaagagaaattacaaaaccttggtgctaaggtgacaggtagcgtttctaaaaagact
gatttaattgttgcaggaagcgatgcaggaagtaaactaaccaaggctcaagatttaggg
attacaatacaagatgaagactggttactcaacctttaa
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