Salinimicrobium tongyeongense: JRG66_15445
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Entry
JRG66_15445 CDS
T08572
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03030
DNA replication
sahn03410
Base excision repair
sahn03420
Nucleotide excision repair
sahn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JRG66_15445 (ligA)
03410 Base excision repair
JRG66_15445 (ligA)
03420 Nucleotide excision repair
JRG66_15445 (ligA)
03430 Mismatch repair
JRG66_15445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sahn03032
]
JRG66_15445 (ligA)
03400 DNA repair and recombination proteins [BR:
sahn03400
]
JRG66_15445 (ligA)
Enzymes [BR:
sahn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JRG66_15445 (ligA)
DNA replication proteins [BR:
sahn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JRG66_15445 (ligA)
DNA repair and recombination proteins [BR:
sahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JRG66_15445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JRG66_15445 (ligA)
MMR (mismatch excision repair)
DNA ligase
JRG66_15445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JRG66_15445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH_3
NagJ_C
DNA_pol_lambd_f
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UZH55318
UniProt:
A0ABY6NS52
LinkDB
All DBs
Position
complement(3501960..3503951)
Genome browser
AA seq
663 aa
AA seq
DB search
MKPEEKIQQLREELHRHNYLYYVLDKPEISDYDFDQKLKELQELEQKHPEFYDENSPTLR
VGGAVTKNFATVVHEHRMYSLDNSYSKEDLENWEKRIEKQVDGEVNFTCELKYDGVSISL
TYEKGEFKQAVTRGDGIQGDDVTKNVRTIRSVPLRLKGDYPEKFEIRGEIVLPYEGFAQL
NAARVEAGEEPYANPRNTASGSLKLQDSAEVARRPLDCLLFSLTGNLPGIKSQYEGLQKA
REWGFKIPAEAKLAKNLKEVMEFVNYWDVHRHDLPYETDGVVVKVNSLQQQEELGYTAKA
PRWAMAYKFKAEQVSTKLNKISYQVGRTGAITPVANLEPVQLGGTTVKRASLHNADQIEK
LDVREGDEVYVEKGGEIIPKIVGVDFTKRDPDSNPTQYITNCPECDTPLVRNEGEAQHYC
PNFNGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVNEGLIGNYADLYELKKEQILPLE
RMAEKSAENLINGIEKSKQIPFERVLFALGIRYVGETVAKKLAKEFKNIDALKKANQQEL
EKVDEIGQRIAESVVEFFADEENVKNVERLKDYGLQLEISAEKLAGQTNKLEGQTFVVSG
VFEMSRNDLKKLIEDNGGKISGSISSKTSYVVAGENMGPSKLAKAESLQIPIIEEKKFLK
MIE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctgaagaaaaaatccaacagctgcgggaagaacttcaccgccacaactacctg
tattacgtactcgataagccggaaatttccgactatgattttgaccagaaactgaaagaa
ttacaggagctggagcaaaaacatccggaattttatgatgagaactccccaactttaaga
gttggtggggctgtgacaaagaatttcgcgaccgtggtgcatgagcacaggatgtattct
ctcgataattcttattcaaaggaagacctggaaaactgggagaaaagaatagagaaacag
gtggatggagaggtgaattttacctgtgaattgaagtatgacggggtgtcaattagcctt
acctatgaaaaaggggaatttaagcaggccgtgacccggggcgacgggattcagggcgat
gatgtcactaagaacgtgcgtaccataaggtctgttcctcttagactgaaaggcgattat
cccgaaaagtttgaaattcggggggaaattgtgcttccgtacgaaggttttgcgcagctc
aatgctgcccgcgtggaggcaggagaagagccttatgcgaacccgcggaacacagcttcg
ggaagcctgaagctgcaggacagtgccgaagttgcccgccggccattagattgtctattg
ttcagcttaacggggaaccttccgggcataaaatcgcagtacgaaggcctgcaaaaagcg
agggaatggggctttaaaattcctgcggaagctaaactggccaaaaacctgaaagaggtg
atggagtttgtaaattactgggatgtgcaccggcacgatttgccttatgagaccgatggc
gtggtggtgaaggtaaacagcctgcagcagcaggaagaactgggatacaccgcaaaagcc
ccgcgttgggccatggcatataaattcaaggccgagcaggtttccacgaaattgaacaag
atcagctaccaggtaggccgcacgggggcgataactccggtggcaaacctggaacccgta
caacttggaggtacaacggtaaaaagagcttctcttcacaacgccgatcaaattgaaaaa
ctcgacgttcgggaaggggacgaggtttatgtggaaaaaggaggagagatcattccgaag
atcgtgggagtagatttcactaaaagagatccggattccaatcctactcaatatatcacc
aattgcccagagtgtgatacaccattggtgagaaatgaaggcgaggcacagcattattgt
cctaacttcaatggttgtccgccacagatcattggcaggattcagcattttatctcccgg
aaagccatggatattgaaggcctgggaggggaaacggtggcacttctggtaaatgaaggc
ctcattggaaactacgccgatctctatgaattgaagaaggagcagatattaccactggaa
cgtatggctgagaaatcggctgaaaacctgatcaatggcatagaaaagtcaaagcaaatt
ccttttgaaagggtactttttgctttgggaatccgctatgtaggggaaactgtagccaaa
aaactggcgaaggagtttaaaaatattgatgctttgaaaaaagccaatcagcaggaactg
gaaaaagttgacgaaataggccagagaattgccgagagtgtggtggagttctttgcagat
gaagagaacgtaaaaaatgtggaacggctgaaggattacggtttgcagttagaaatttct
gccgagaaacttgccggacaaaccaataaactggaaggccagacctttgtggtttctgga
gtatttgaaatgtcacgcaatgacctgaagaagcttattgaagacaatggcggaaaaatt
tcaggatccatttcatccaaaaccagttatgtggtcgcaggtgaaaatatgggccccagc
aaacttgcaaaggctgaaagtcttcagatcccaatcattgaggagaagaaattcctcaag
atgatcgaatag
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