Spiractinospora alimapuensis: J4H86_23010
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Entry
J4H86_23010 CDS
T07850
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saiu
Spiractinospora alimapuensis
Pathway
saiu03030
DNA replication
saiu03410
Base excision repair
saiu03420
Nucleotide excision repair
saiu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4H86_23010 (ligA)
03410 Base excision repair
J4H86_23010 (ligA)
03420 Nucleotide excision repair
J4H86_23010 (ligA)
03430 Mismatch repair
J4H86_23010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saiu03032
]
J4H86_23010 (ligA)
03400 DNA repair and recombination proteins [BR:
saiu03400
]
J4H86_23010 (ligA)
Enzymes [BR:
saiu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4H86_23010 (ligA)
DNA replication proteins [BR:
saiu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4H86_23010 (ligA)
DNA repair and recombination proteins [BR:
saiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4H86_23010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4H86_23010 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4H86_23010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4H86_23010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QVQ51618
LinkDB
All DBs
Position
4928456..4930666
Genome browser
AA seq
736 aa
AA seq
DB search
MSADNGSEFDTAERTSHTNTAPAPPSGVRERHAELSQDLDDYSYRYYLGSPIVSDAEYDA
MMRELQDLESRYPDLQTPDSPTQKVGAPISTDFAPVQHLERMESLDNAFDRAEFSAWIQR
ASNEVAIDAFLCELKIDGLAVDLVYENGRLVRAATRGDGRVGEDITPNLRTIEAVPTRLA
GDRVPELLEVRGEVFLPVAEFEALNVRLGDEGKALFANPRNAAAGSLRQKDPRVAAQRPL
SMIAHGVGAHTGVTFDRQSHAYEMLREWGLPISDRYRVVSTADEVHAFIDYYADNRHEPA
YQIDGVVVKVDDTATQRRLGSTSRAPRWAIAYKYAPEEVTTELLDVRVNVGRTGRVTPYG
VMRPVHVAGSEVEFATLHNAQEVERKGVLIGDTVVLRKAGDVIPEILGPVPDKRDGTERP
FVMPTECPECGTTLRRMKEEDVDIRCPNARSCPAQLRERLFYLAGRAAFDIDALGYEAAT
ALTKPDEPARPPLTDEGDLFSLTPEQLANVRMWWDVKRKGELTGERELVSFFYTKPTAAH
PDSVPTKNTEKLFEQLRAVRDVPLWRVLVALSIRHVGPTAAQELARHFRAMDAIFSASEE
QLAAVDGVGPTIARSLIEWYSVDWHRDIVAKWRAAGVRMRDEGAEGPRPLEGTTVVITGS
LEGYTRDSAKEAVQNLGGKVSGSVSKKTDFVVAGDAPGSKYDKAVALGVPVLDEEGFVTL
LEEGADAARGAAHVGE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggacaacgggagtgagttcgacaccgcggaacggacgagccacacgaacacg
gcacccgcaccgccctcgggagtccgggagcgtcacgccgagctgagccaggatctcgac
gactacagctaccgctactacctcggcagccccatcgtcagcgacgccgagtacgacgcc
atgatgcgcgaactccaggacctggagagccgctaccccgacctccagactccggactcg
ccgacccagaaggtcggcgccccgatcagcaccgacttcgcgccggtacagcacctggag
cggatggagagcctggacaacgccttcgaccgggcggagttcagcgcctggatccaacgc
gcgtccaacgaggtcgccatcgacgcgttcctgtgcgaactcaagatcgacggcctcgcc
gtggacctggtgtacgagaacgggcgcctggtgcgtgccgccacccgcggagacgggcgg
gtcggcgaggacattaccccgaacctccgcaccatcgaggcggtgccgacccggctggcc
ggagacagggtgccggaactccttgaggtcaggggcgaggtcttcctgcccgtcgccgaa
ttcgaggcgctgaacgtccggctcggcgacgagggcaaggctctcttcgccaacccccgc
aacgccgccgccggctcgttgcggcagaaggacccacgggtcgccgcgcagcgccccctg
agcatgatcgcgcacggggttggcgcgcacaccggcgtcaccttcgaccgtcagtcccac
gcctacgagatgctccgcgaatggggcctgcccatcagcgaccgttaccgcgtcgtctcc
acggcggacgaggtgcacgcgttcatcgactactacgcggacaaccgccatgagccggcc
taccagatcgacggcgtcgtggtgaaggtggacgacaccgcgacccaacgccgtctgggc
tccacgagccgcgcgccccggtgggcgatcgcctacaagtacgcccccgaggaggtcacc
acggagctcctggacgtccgggtgaacgtggggcgcaccgggcgggtcactccctacggg
gtcatgcgtcccgtgcacgtcgccggctcggaggtcgagttcgccaccctgcacaacgca
caagaagtcgagcgcaagggtgtcctgatcggcgacaccgtcgtgttgcgcaaggcgggc
gacgtgatcccggagatcctcgggccggttccggacaagcgggacggaacagagcgtccg
ttcgttatgccaaccgagtgcccggagtgtggcacgacgctgcgtcggatgaaggaggag
gacgtggacatccgttgtcccaacgcccgctcctgccccgcccagctccgcgagcggctt
ttctacctcgccggacgtgccgcgttcgacatcgacgccctcggttatgaggccgcgacc
gcgctcaccaaaccggacgagccggcacggcctcccctcaccgacgagggcgacctgttc
tccctcacccctgagcagctcgccaacgtccgcatgtggtgggacgtcaagcgcaagggc
gaactcaccggcgaacgtgaactggtgtcgttcttctacaccaaacccaccgccgcccat
ccggactcggttccgaccaagaacaccgagaaactgttcgagcagcttcgtgcggtgcga
gatgtgccactgtggcgcgtcctggtcgccctgtccattcgtcatgtcggccccacggcc
gcccaggagctcgcgcgccacttccgcgccatggacgccatcttctccgcgtcggaggaa
caactcgcggccgtggacggggtgggtcccacgatcgcccgctcgcttatcgagtggtac
tccgtggactggcaccgcgacatcgtggcgaagtggcgggcagccggggtacggatgcgg
gacgagggcgctgagggtccccgtcccctcgagggcaccacagtggtcatcacggggtcg
ctggaggggtacacccgggattccgcgaaggaggccgtccagaatctggggggaaaggtc
tccggatcggtgtccaagaagaccgacttcgtggtggcgggcgacgcgccgggatccaag
tacgacaaggctgttgcgctgggggttcccgtcctcgacgaggaagggttcgtgaccctg
ttggaggaaggagctgacgccgcgcgcggtgccgcccacgtcggggaataa
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