KEGG   Streptomyces akebiae: K1J60_13260
Entry
K1J60_13260       CDS       T08702                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sakb  Streptomyces akebiae
Pathway
sakb03030  DNA replication
sakb03410  Base excision repair
sakb03420  Nucleotide excision repair
sakb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sakb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    K1J60_13260 (ligA)
   03410 Base excision repair
    K1J60_13260 (ligA)
   03420 Nucleotide excision repair
    K1J60_13260 (ligA)
   03430 Mismatch repair
    K1J60_13260 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sakb03032]
    K1J60_13260 (ligA)
   03400 DNA repair and recombination proteins [BR:sakb03400]
    K1J60_13260 (ligA)
Enzymes [BR:sakb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     K1J60_13260 (ligA)
DNA replication proteins [BR:sakb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     K1J60_13260 (ligA)
DNA repair and recombination proteins [BR:sakb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     K1J60_13260 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     K1J60_13260 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     K1J60_13260 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      K1J60_13260 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia HHH
Other DBs
NCBI-ProteinID: QYX82930
LinkDB
Position
complement(3123065..3125284)
AA seq 739 aa
MAGDKDAQPTSVPAETAVPAEAREKHARLAEQIEEHRFRYYVKDDPIVSDAEFDELLRTL
EALEDEYGELRTPDSPTQKVAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERVAKEV
GTSDYHLLCELKIDGLAVNLTYEDGRLTRAATRGTGRTGEDITPNVMTIAEIPHRLKGDR
VPRLVEIRGEVYFPMEAFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMV
VHGIGALEGFDGGFTRLSQAYDLLKSWGLPTAEHNRVVDDLDGVREFIAYYGEHRHSVAH
EIDGAVVKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQ
VEPVTVAGSEVEFATLHNQEVVKAKNVLIGDTVVIRKAGDVIPEILGPVVALRDEKATRP
FVMPTECPECGEPLAPAKEGDIDVRCLNSRSCPAQLRERLFYLAGRKCLDIEHFGYVAAA
ALTKPLEPSEPPLHDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPETGEKKHAMVFANK
EGGPRKNAVAMLENIQAAKNRPLARILTGLSIRHVGPVAAEALAREFRSIDSIREATEEQ
LAATEGVGPTIAASLKEWFAVEWHQEILRKWKAAGVRLEEERSGEDEGPRPLEGLTVVVT
GTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGENPGSKFDKAMQLKVPVLNEDGFA
VLLEQGPDAAAEVALPIEE
NT seq 2220 nt   +upstreamnt  +downstreamnt
gtggccggcgacaaggacgcacagcccacatcggtacccgccgagacagcggtgcccgcc
gaagcacgcgagaagcacgcgcggctcgccgaacagatcgaggagcaccgcttccggtac
tacgtgaaggacgacccgatcgtcagcgacgcggagttcgacgaactcctgcgcacactg
gaggcgttggaggacgagtacggcgagctgcgcaccccggactcgccgacgcagaaggtg
gccgtcgagtacgagaccgacctcgccgaggtggagcaccgcgagcgcatgctctccctc
gacaacgtcttcgacgacgagggcctcgccgcctgggccgagcgcgtcgccaaggaggtc
ggcacctccgactaccacctgctgtgcgagctcaagatcgacggactcgcggtcaacctg
acgtacgaggacggcaggctcacccgagccgccacccggggcaccggtcggaccggcgag
gacatcacgcccaacgtcatgacgatcgccgagatcccgcaccggctgaagggcgaccgc
gtcccccggctcgtcgagatccggggcgaggtctacttcccgatggaggccttccagggc
ctcaacgaacgccgtgtggcggccggcgagaagccgtacgccaacccccgtaactccgcc
tcgggttcactgcgccagaaggaccccaaggtcaccgccaccctgccgctgcacatggtc
gtccacggcatcggcgccctggagggcttcgacggcggtttcacgcgcctgtcccaggcc
tacgacctcctcaagtcgtggggcctgcccaccgccgagcacaacagggtggtcgacgac
ctcgacggcgtacgggagttcatcgcctactacggcgagcaccgccactccgtggcgcac
gagatcgacggcgcggtcgtcaagctcgacgagatccggctgcagggccgcctcggatcg
acggctcgcgcaccccgctgggcgatcgcctacaagtacgcgccggaagaggtcaacacc
aagctcatcgacatcaaggtgggcgtcggccgcaccggccgggtcacgccgtacgcccag
gtcgagccggtcacggtggccggctccgaggtcgagttcgccaccctgcacaaccaggag
gtcgtcaaggcgaagaacgtcctcatcggcgacacggtcgtcatccgcaaggccggtgac
gtcatccccgagatcctcgggccggtcgtggcgctgcgcgacgagaaagcgacgcgcccc
ttcgtgatgccgaccgagtgcccggagtgcggtgagcccctggcgcccgccaaggagggc
gacatcgacgtgcggtgcctcaactcccgtagttgcccggcccagttgcgcgagcgtctc
ttctacctcgccggacgcaagtgcctcgacatcgagcacttcggatacgtcgccgccgcc
gcgctcaccaagccgctggagccgtccgagccgcccctccatgacgagggcgacctgttc
gacctcaccatcgaacagctgctgcccatcaaggcgtacgtcctcgaccaggacagcggc
ctgcccaagcgggacccggagaccggcgagaagaagcacgccatggtcttcgccaacaag
gagggcgggccgaggaagaacgcggtcgcgatgctggagaacatccaggcggccaagaac
cggccgctcgctcggatcctgaccggtctgtcgatccggcacgtcggcccggtggccgcc
gaggcgctcgcgcgtgaattccgctccatcgacagcatcagggaggcgaccgaggaacag
ctcgccgcgaccgagggcgtcggcccgaccatcgccgcttccctgaaggagtggttcgcg
gtggagtggcatcaggagattctccgcaagtggaaggccgccggggtccgcctggaggag
gagcgctccggcgaggacgaaggccccaggcccctcgaagggctgacggtcgtcgtgacc
gggacactcgaacaccacacgcgtgacggggccaaggaggcgctgcagagccggggcgcg
aaggtcacggggtcggtgtcgaagaagacctccttcgtcgtggtcggtgagaatccgggc
tccaagttcgacaaggcgatgcagctcaaggtgcccgtcctgaacgaggacggcttcgcc
gtcctgctcgaacaagggccggacgcagccgcggaagtcgcgctcccgatcgaggagtag

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