Streptomyces akebiae: K1J60_13260
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Entry
K1J60_13260 CDS
T08702
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sakb
Streptomyces akebiae
Pathway
sakb03030
DNA replication
sakb03410
Base excision repair
sakb03420
Nucleotide excision repair
sakb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1J60_13260 (ligA)
03410 Base excision repair
K1J60_13260 (ligA)
03420 Nucleotide excision repair
K1J60_13260 (ligA)
03430 Mismatch repair
K1J60_13260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sakb03032
]
K1J60_13260 (ligA)
03400 DNA repair and recombination proteins [BR:
sakb03400
]
K1J60_13260 (ligA)
Enzymes [BR:
sakb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1J60_13260 (ligA)
DNA replication proteins [BR:
sakb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1J60_13260 (ligA)
DNA repair and recombination proteins [BR:
sakb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1J60_13260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1J60_13260 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1J60_13260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1J60_13260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QYX82930
LinkDB
All DBs
Position
complement(3123065..3125284)
Genome browser
AA seq
739 aa
AA seq
DB search
MAGDKDAQPTSVPAETAVPAEAREKHARLAEQIEEHRFRYYVKDDPIVSDAEFDELLRTL
EALEDEYGELRTPDSPTQKVAVEYETDLAEVEHRERMLSLDNVFDDEGLAAWAERVAKEV
GTSDYHLLCELKIDGLAVNLTYEDGRLTRAATRGTGRTGEDITPNVMTIAEIPHRLKGDR
VPRLVEIRGEVYFPMEAFQGLNERRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMV
VHGIGALEGFDGGFTRLSQAYDLLKSWGLPTAEHNRVVDDLDGVREFIAYYGEHRHSVAH
EIDGAVVKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQ
VEPVTVAGSEVEFATLHNQEVVKAKNVLIGDTVVIRKAGDVIPEILGPVVALRDEKATRP
FVMPTECPECGEPLAPAKEGDIDVRCLNSRSCPAQLRERLFYLAGRKCLDIEHFGYVAAA
ALTKPLEPSEPPLHDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPETGEKKHAMVFANK
EGGPRKNAVAMLENIQAAKNRPLARILTGLSIRHVGPVAAEALAREFRSIDSIREATEEQ
LAATEGVGPTIAASLKEWFAVEWHQEILRKWKAAGVRLEEERSGEDEGPRPLEGLTVVVT
GTLEHHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGENPGSKFDKAMQLKVPVLNEDGFA
VLLEQGPDAAAEVALPIEE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaaggacgcacagcccacatcggtacccgccgagacagcggtgcccgcc
gaagcacgcgagaagcacgcgcggctcgccgaacagatcgaggagcaccgcttccggtac
tacgtgaaggacgacccgatcgtcagcgacgcggagttcgacgaactcctgcgcacactg
gaggcgttggaggacgagtacggcgagctgcgcaccccggactcgccgacgcagaaggtg
gccgtcgagtacgagaccgacctcgccgaggtggagcaccgcgagcgcatgctctccctc
gacaacgtcttcgacgacgagggcctcgccgcctgggccgagcgcgtcgccaaggaggtc
ggcacctccgactaccacctgctgtgcgagctcaagatcgacggactcgcggtcaacctg
acgtacgaggacggcaggctcacccgagccgccacccggggcaccggtcggaccggcgag
gacatcacgcccaacgtcatgacgatcgccgagatcccgcaccggctgaagggcgaccgc
gtcccccggctcgtcgagatccggggcgaggtctacttcccgatggaggccttccagggc
ctcaacgaacgccgtgtggcggccggcgagaagccgtacgccaacccccgtaactccgcc
tcgggttcactgcgccagaaggaccccaaggtcaccgccaccctgccgctgcacatggtc
gtccacggcatcggcgccctggagggcttcgacggcggtttcacgcgcctgtcccaggcc
tacgacctcctcaagtcgtggggcctgcccaccgccgagcacaacagggtggtcgacgac
ctcgacggcgtacgggagttcatcgcctactacggcgagcaccgccactccgtggcgcac
gagatcgacggcgcggtcgtcaagctcgacgagatccggctgcagggccgcctcggatcg
acggctcgcgcaccccgctgggcgatcgcctacaagtacgcgccggaagaggtcaacacc
aagctcatcgacatcaaggtgggcgtcggccgcaccggccgggtcacgccgtacgcccag
gtcgagccggtcacggtggccggctccgaggtcgagttcgccaccctgcacaaccaggag
gtcgtcaaggcgaagaacgtcctcatcggcgacacggtcgtcatccgcaaggccggtgac
gtcatccccgagatcctcgggccggtcgtggcgctgcgcgacgagaaagcgacgcgcccc
ttcgtgatgccgaccgagtgcccggagtgcggtgagcccctggcgcccgccaaggagggc
gacatcgacgtgcggtgcctcaactcccgtagttgcccggcccagttgcgcgagcgtctc
ttctacctcgccggacgcaagtgcctcgacatcgagcacttcggatacgtcgccgccgcc
gcgctcaccaagccgctggagccgtccgagccgcccctccatgacgagggcgacctgttc
gacctcaccatcgaacagctgctgcccatcaaggcgtacgtcctcgaccaggacagcggc
ctgcccaagcgggacccggagaccggcgagaagaagcacgccatggtcttcgccaacaag
gagggcgggccgaggaagaacgcggtcgcgatgctggagaacatccaggcggccaagaac
cggccgctcgctcggatcctgaccggtctgtcgatccggcacgtcggcccggtggccgcc
gaggcgctcgcgcgtgaattccgctccatcgacagcatcagggaggcgaccgaggaacag
ctcgccgcgaccgagggcgtcggcccgaccatcgccgcttccctgaaggagtggttcgcg
gtggagtggcatcaggagattctccgcaagtggaaggccgccggggtccgcctggaggag
gagcgctccggcgaggacgaaggccccaggcccctcgaagggctgacggtcgtcgtgacc
gggacactcgaacaccacacgcgtgacggggccaaggaggcgctgcagagccggggcgcg
aaggtcacggggtcggtgtcgaagaagacctccttcgtcgtggtcggtgagaatccgggc
tccaagttcgacaaggcgatgcagctcaaggtgcccgtcctgaacgaggacggcttcgcc
gtcctgctcgaacaagggccggacgcagccgcggaagtcgcgctcccgatcgaggagtag
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