Salicibibacter halophilus: EPH95_11655
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Entry
EPH95_11655 CDS
T06083
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sale
Salicibibacter halophilus
Pathway
sale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPH95_11655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sale03021
]
EPH95_11655
03019 Messenger RNA biogenesis [BR:
sale03019
]
EPH95_11655
Transcription machinery [BR:
sale03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EPH95_11655
Messenger RNA biogenesis [BR:
sale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EPH95_11655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA
AAA_22
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QDI91747
UniProt:
A0A514LIR7
LinkDB
All DBs
Position
2403494..2404789
Genome browser
AA seq
431 aa
AA seq
DB search
MSLSLAELEHKTLRDLYRLAKEFRISYYSKLTKQELIFAILKGQAEQDGLMFMEGVLEII
QTEGYGFLRPINYLPSSQDIYISASQIRRFDLRNGDRVSGKVRKPKDNERYHGLLQVEAV
NGDEPDTAKERPHFPALTPLFPNERMRLETNPGRLSARIMDIITPVGFGQRGLIVAPPKA
GKTSLLKQVANSITENHPDAELIMLLIDERPEEVTDIERSVDGEVVHSTFDEVPENHVKV
TELVLERAMRLVEQKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSMTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRRLAERRIFPSIDIRR
SSTRKEELLVAKSQLESLWAMRKTMNDSPEFIDHFIRRIKDTKTNDEFFERMEQDKARTN
TKAKAGSYSSG
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttatctttagctgagcttgaacataagacgttgcgggatctttacaggctcgcg
aaagaatttagaatttcctattatagcaaattgacgaaacaggaattgatcttcgcgatt
ttaaaaggacaagcggaacaggacggtcttatgttcatggaaggcgtactggaaattata
caaacagaagggtatggtttcctgcggccgatcaattatttgccgagttctcaagatatt
tatatatctgcatcgcaaattcgccgtttcgatttgcgtaatggggaccgtgtctccggg
aaggtgcggaaaccaaaagataacgagcgttatcacggattgttgcaagtagaggcagta
aatggagatgaaccggatacagcgaaagaacgcccccatttcccggcgctcacgccgtta
ttcccgaatgaacgcatgcgtttggaaacaaacccgggacggctttccgccagaataatg
gatattattacacccgtgggttttgggcagcgagggctaattgtagcaccgccgaaagca
gggaaaacatcgcttttgaaacaggtggcgaatagcataacggaaaatcatcccgatgcc
gaattaatcatgttgctcattgatgaacgtccggaagaagtgaccgatattgaacgctcg
gtagacggggaggtggtccattccacttttgatgaagtgccggaaaatcatgtgaaagtg
accgagcttgtattggaacgggccatgcgtctcgtggaacaaaaaaaagatgtcgtcatt
ttaatggacagcattacgcggttggcccgggcgtataacctcgtcataccgccgagcgga
cgaacgttgtccggagggattgatcccgctgctttccatcgcccgaaacgatttttcggg
gctgcacgcaatatagaagaaggtggcagcatgaccatcttggccacggcacttgtcgat
acaggttcccgcatggacgatgtcatttatgaagaatttaaaggcacgggaaacatggaa
ttgcacttggaccgccgcctcgcggaaaggcgaatattcccgtctatcgatatccggcgt
tccagcacccgaaaagaagagctgctagtcgcgaaaagccagctggaaagtttatgggca
atgcgcaaaacgatgaacgattcccccgaattcatcgatcattttattcgccggatcaaa
gatacgaaaacaaatgatgaattctttgagcgcatggaacaagataaagcaagaacaaac
acaaaagcgaaagccggtagttattcctccgggtag
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