Shewanella algae: BS332_16475
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Entry
BS332_16475 CDS
T05622
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
salg
Shewanella algae
Pathway
salg03030
DNA replication
salg03410
Base excision repair
salg03420
Nucleotide excision repair
salg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BS332_16475 (ligA)
03410 Base excision repair
BS332_16475 (ligA)
03420 Nucleotide excision repair
BS332_16475 (ligA)
03430 Mismatch repair
BS332_16475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salg03032
]
BS332_16475 (ligA)
03400 DNA repair and recombination proteins [BR:
salg03400
]
BS332_16475 (ligA)
Enzymes [BR:
salg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BS332_16475 (ligA)
DNA replication proteins [BR:
salg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BS332_16475 (ligA)
DNA repair and recombination proteins [BR:
salg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BS332_16475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BS332_16475 (ligA)
MMR (mismatch excision repair)
DNA ligase
BS332_16475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BS332_16475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AXQ15627
LinkDB
All DBs
Position
3635997..3638003
Genome browser
AA seq
668 aa
AA seq
DB search
MQAIENEIDQLISTINEHNIRYYVDDNPSIPDAEYDRLMQRLKTLEAEHPELQRSDSPSL
RVGGLALAKFEQVTHLKPMLSLDNAFSEEDFAAFHKRVTDRVGEFSYCCEPKLDGLAVSI
LYRDGVLERAATRGDGAVGEDITENVRTIRAVPLKLRGDDYPPLLEVRGEVFMPKAAFEA
LNERNRVKGDKLFVNPRNAAAGSLRQLDSKITASRALAFYAYALGVVEPESFPLADTHLG
QLQQLKTWGLPVSSEIRLAKDLSEVDDYYRDIMARRSALAYEIDGVVFKVNSIEAQQTLG
FVSRAPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNA
DEIARLGVKVGDTVIIRRAGDVIPQVVAVVPEKRPEGAKEISFPEQCPVCGSQVERLEGE
AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVESPADLFSLTASA
LTMLERMGLKSATNLVQAIEAAKQTTLAKFLYALGIREVGESTAANLARHFKELDALKQA
SVEQLIEVEDVGAIVAQHVAHFFAQPHNLEVIDKLLAAGVTWPAIEAPSKDEQPLKGQTW
VLTGTLSQMSRTDAKAQLEALGAKVSGSVSKKTDCVVAGEAAGSKLTKANELGVKVLDEA
GLLALLQP
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccattgaaaacgaaattgatcagctgataagtaccattaacgagcacaacatt
cgctactatgtggatgacaatcccagcattcccgacgccgaatatgaccgcctgatgcag
cggctcaagacactggaggccgagcaccctgagctgcaacgcagcgactctccaagcctc
agagtcggtggtctggcgctggccaagtttgaacaggtgactcacctcaaacctatgctc
agtctggacaacgccttcagtgaagaagactttgctgccttccataagcgggtgactgac
agagtcggcgagttcagctattgctgcgagcccaagctcgatggtctggcggtcagtatc
ctctatcgcgatggcgtgctggagcgtgccgccacccggggcgatggcgcggtcggtgaa
gatattaccgaaaacgttcgtaccattcgggcggtgccgctgaaactcaggggcgatgat
tatccgccgctgttggaagtgcgcggtgaagtattcatgcccaaggcggccttcgaggcg
ctcaacgagcgcaaccgggtcaagggagacaagctgtttgtcaatccgcgtaatgccgcc
gccggcagtttgcggcagctggactccaagatcactgcctctcgggcactggcgttttac
gcttatgcactgggcgtggttgagccggaatccttcccgctggcggacacccatcttggg
cagttgcagcagcttaaaacctggggattgccggtcagcagtgagatccgccttgccaag
gacctcagcgaagtggatgactactaccgggatattatggcgcgccgcagtgctttggcc
tatgaaatcgatggtgtggtattcaaggtcaacagcatagaagcgcagcagacactggga
tttgtctcccgtgcaccgcgctgggccatcgcctataagtttccggcccaggaagagatg
actctgctcgaaggggtcgactttcaggtaggccgcaccggcgccgtgacaccggtcgcc
aggctcaagcctgtgtttgtcggtggggtgacagtttccaacgccactttgcacaacgcc
gacgaaatcgcccgccttggggtcaaagttggcgatactgtgatcattcgccgcgccggt
gatgttatcccgcaagtggttgccgtggtgccggaaaaaagacctgagggtgccaaagag
atcagtttcccggagcaatgcccggtttgtggctctcaggtagaacgcctcgagggggaa
gccgtggctcgctgcaccggtggcctgttctgcgaagcgcagcgcaaggaagccatcaaa
cactttgcctcccgcaaggcgctggatatagacggcatgggcgacaagatagtcgagcag
ctgatcgataaggagctggtagagagcccggcggatctgttctcactcacggcttcggcc
ttgaccatgctggagcggatggggctcaagtcggccaccaatctggtgcaggccatagaa
gcagccaaacaaacaaccctggccaagtttctctacgccttggggatccgagaggtgggt
gaatccaccgctgccaacctggcacggcacttcaaagagctcgatgccctgaagcaagcg
agtgtcgagcagcttattgaagtggaagatgtcggtgccatagtggctcagcatgtggcg
cacttctttgctcagccccacaaccttgaagtgatagataaactgctggccgccggggtg
acctggccggccatcgaagcgccgtctaaagacgagcaaccgctcaaggggcagacctgg
gtattgaccggcaccctgagtcagatgagccgcactgacgccaaggcgcagctggaggcg
ctcggcgccaaagtgtccggcagtgtttccaagaagacagactgcgtggtggccggcgag
gccgctggatccaaattgaccaaggccaatgagctgggggtcaaggtgttggatgaagcc
ggcctgctggcgctgctgcagccctga
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